Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   E5L67_RS06020 Genome accession   NZ_CP038868
Coordinates   1145195..1145506 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain 16SHKX65C     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140195..1150506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS06010 - 1141424..1141507 (+) 84 Protein_1159 HAD family hydrolase -
  E5L67_RS06015 nifJ 1141611..1145171 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  E5L67_RS06020 ctsR 1145195..1145506 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  E5L67_RS06025 ctsD 1145484..1146902 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  E5L67_RS06030 ctsP 1146895..1147491 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  E5L67_RS06035 - 1147488..1148075 (+) 588 WP_002810825.1 CDC27 family protein -
  E5L67_RS06040 ctsE 1148068..1149630 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=356065 E5L67_RS06020 WP_002779316.1 1145195..1145506(+) (ctsR) [Campylobacter coli strain 16SHKX65C]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=356065 E5L67_RS06020 WP_002779316.1 1145195..1145506(+) (ctsR) [Campylobacter coli strain 16SHKX65C]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment