Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY55_RS14885 Genome accession   NZ_CP046831
Coordinates   1191453..1192433 (-) Length   326 a.a.
NCBI ID   WP_005454798.1    Uniprot ID   Q87Q07
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186453..1197433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS14870 - 1186951..1189395 (+) 2445 WP_083135778.1 collagenase -
  GPY55_RS14880 - 1189647..1191443 (-) 1797 WP_083135779.1 aminopeptidase P family protein -
  GPY55_RS14885 amiE 1191453..1192433 (-) 981 WP_005454798.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  GPY55_RS14890 - 1192443..1193426 (-) 984 WP_021449172.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GPY55_RS14895 - 1193437..1194369 (-) 933 WP_015296632.1 ABC transporter permease subunit -
  GPY55_RS14900 oppB 1194379..1195299 (-) 921 WP_017448601.1 oligopeptide ABC transporter permease OppB -
  GPY55_RS14905 - 1195466..1197076 (-) 1611 WP_031847558.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36406.21 Da        Isoelectric Point: 8.3113

>NTDB_id=356067 GPY55_RS14885 WP_005454798.1 1191453..1192433(-) (amiE) [Vibrio parahaemolyticus strain 2012AW-0224]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=356067 GPY55_RS14885 WP_005454798.1 1191453..1192433(-) (amiE) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCAAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTCGGCATCGCGCGCGCCTTAATCCTCAATCCGGACTTAGTGGTGTGTGATGAACCCGTCAG
TGCATTGGATGTATCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCTGTAAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87Q07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368

Multiple sequence alignment