Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   E5Z46_RS15945 Genome accession   NZ_CP038860
Coordinates   3058789..3059085 (-) Length   98 a.a.
NCBI ID   WP_075261488.1    Uniprot ID   -
Organism   Geobacillus kaustophilus NBRC 102445     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3053789..3064085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Z46_RS15910 (E5Z46_15900) - 3054388..3056052 (+) 1665 WP_015375392.1 DEAD/DEAH box helicase -
  E5Z46_RS15915 (E5Z46_15905) - 3056039..3056833 (+) 795 WP_042380976.1 YqhG family protein -
  E5Z46_RS15920 (E5Z46_15910) - 3056936..3057115 (-) 180 WP_011231910.1 YqzE family protein -
  E5Z46_RS15925 (E5Z46_15915) comGG 3057163..3057552 (-) 390 WP_042380980.1 competence type IV pilus minor pilin ComGG -
  E5Z46_RS15930 (E5Z46_15920) comGF 3057627..3058073 (-) 447 WP_042380983.1 competence type IV pilus minor pilin ComGF -
  E5Z46_RS15935 (E5Z46_15925) - 3058052..3058378 (-) 327 WP_042380986.1 type II secretion system protein -
  E5Z46_RS15940 (E5Z46_15930) comGD 3058362..3058799 (-) 438 WP_033004731.1 competence type IV pilus minor pilin ComGD -
  E5Z46_RS15945 (E5Z46_15935) comGC 3058789..3059085 (-) 297 WP_075261488.1 competence type IV pilus major pilin ComGC Machinery gene
  E5Z46_RS15950 (E5Z46_15940) comGB 3059273..3060301 (-) 1029 WP_042380993.1 competence type IV pilus assembly protein ComGB -
  E5Z46_RS15955 (E5Z46_15945) comGA 3060298..3061371 (-) 1074 WP_011231917.1 competence type IV pilus ATPase ComGA Machinery gene
  E5Z46_RS15960 (E5Z46_15950) - 3061564..3062262 (+) 699 WP_011231918.1 helix-turn-helix transcriptional regulator -
  E5Z46_RS15965 (E5Z46_15955) - 3062421..3062663 (+) 243 WP_008879854.1 DUF2626 family protein -
  E5Z46_RS15970 (E5Z46_15960) - 3062747..3063880 (-) 1134 WP_020278526.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10779.61 Da        Isoelectric Point: 7.2422

>NTDB_id=356005 E5Z46_RS15945 WP_075261488.1 3058789..3059085(-) (comGC) [Geobacillus kaustophilus NBRC 102445]
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISTNGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=356005 E5Z46_RS15945 WP_075261488.1 3058789..3059085(-) (comGC) [Geobacillus kaustophilus NBRC 102445]
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCACGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.125

97.959

0.52
  comGC Staphylococcus aureus MW2

41.935

94.898

0.398
  comGC Staphylococcus aureus N315

41.935

94.898

0.398

Multiple sequence alignment