Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GP469_RS06440 Genome accession   NZ_CP046808
Coordinates   1296535..1298616 (+) Length   693 a.a.
NCBI ID   WP_005496747.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1291535..1303616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP469_RS06420 gmk 1292438..1293061 (+) 624 WP_005496750.1 guanylate kinase -
  GP469_RS06425 rpoZ 1293243..1293515 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  GP469_RS06430 spoT 1293555..1295675 (+) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GP469_RS06435 trmH 1295733..1296416 (+) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  GP469_RS06440 recG 1296535..1298616 (+) 2082 WP_005496747.1 ATP-dependent DNA helicase RecG Machinery gene
  GP469_RS06445 - 1298849..1300240 (+) 1392 WP_005459007.1 uracil-xanthine permease family protein -
  GP469_RS06450 envZ 1300305..1301597 (-) 1293 WP_005459014.1 two-component system sensor histidine kinase EnvZ -
  GP469_RS06455 ompR 1301703..1302422 (-) 720 WP_005459027.1 two-component system response regulator OmpR -
  GP469_RS06460 - 1302641..1303033 (-) 393 WP_005496742.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76738.75 Da        Isoelectric Point: 7.9784

>NTDB_id=355886 GP469_RS06440 WP_005496747.1 1296535..1298616(+) (recG) [Vibrio parahaemolyticus strain 2013V-1146]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALALLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
TLMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPSNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=355886 GP469_RS06440 WP_005496747.1 1296535..1298616(+) (recG) [Vibrio parahaemolyticus strain 2013V-1146]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCTCTGCGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCTGCGGTACAAGGTAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGACGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACAGATGGCCTGCGTCAA
ATCACTTTACGTAACCTTACTGAGCAAGCATTGGCGCTACTCGATAAAGCGGCAGTGCAAGAATTGCTACCTTCTGGCTT
GTATAATCATCAGATTACTATGTCGCAGGCGTTGCACACCATTCATCGCCCGCCGCCAACCATTAATTTAGATGAATTTG
ATGAAGGTAAGCACCCCGCTCAAATCCGTTTGATCATGGAAGAATTGCTCGCTCAGAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCACGTGTGGTGAAAGAGATTGAATCCGACCTCGAAAAGCCGCATCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGAAAAACATTGGTTGCCGCGCTAGCCGCAGTCAGAGCCATTGAGCACGGTTACCAAGTG
ACTTTAATGGCACCAACAGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGGCATTCA
AGTTGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCAACTCCGATTCCTCGCACACTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGTGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCAGAAGTGTTAGAAGCGCAAGCCGCAGCAGACAC
CGCTGAAGAGCTGCAGCGCAAACTGCCAGATGTAAAAATTGGCCTAGTTCATGGCCGTATGAAACCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCGCAATTACACCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACTCCCCTCTGTCGAAAACCGCGCAAAAACGCCTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTCGAGATCCGCGGGCCCGGCGAATTATTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATTCCCGAAGTTCAACGTATTGCTCGTCA
TATTCACGACAATTACCCAAGCAATGCAGCCGCCATCATCGATCGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.149

96.681

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.149

96.681

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.514

94.949

0.375