Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SaO82_RS07820 Genome accession   NZ_CP038819
Coordinates   1588676..1589122 (-) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O82     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583676..1594122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO82_RS07790 (SaO82_1460) gcvPA 1584602..1585948 (-) 1347 WP_000019686.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SaO82_RS07795 (SaO82_1461) gcvT 1585968..1587059 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  SaO82_RS07800 (SaO82_1462) - 1587218..1587742 (-) 525 WP_001015120.1 shikimate kinase -
  SaO82_RS07805 - 1587732..1587878 (-) 147 WP_001789879.1 hypothetical protein -
  SaO82_RS07810 (SaO82_1463) comGF 1587975..1588472 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  SaO82_RS07815 (SaO82_1464) comGE 1588390..1588689 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SaO82_RS07820 (SaO82_1465) comGD 1588676..1589122 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  SaO82_RS07825 (SaO82_1466) comGC 1589100..1589411 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SaO82_RS07830 (SaO82_1467) comGB 1589425..1590495 (-) 1071 WP_000776417.1 competence type IV pilus assembly protein ComGB Machinery gene
  SaO82_RS07835 (SaO82_1468) comGA 1590467..1591441 (-) 975 WP_000697222.1 competence type IV pilus ATPase ComGA Machinery gene
  SaO82_RS07840 (SaO82_1469) - 1591493..1592116 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  SaO82_RS07845 (SaO82_1470) - 1592113..1592442 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  SaO82_RS07850 (SaO82_1471) - 1592442..1593428 (-) 987 WP_000161315.1 ROK family glucokinase -
  SaO82_RS07855 - 1593425..1593628 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=355806 SaO82_RS07820 WP_001791207.1 1588676..1589122(-) (comGD) [Staphylococcus aureus strain O82]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=355806 SaO82_RS07820 WP_001791207.1 1588676..1589122(-) (comGD) [Staphylococcus aureus strain O82]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment