Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KAN01_RS15530 Genome accession   NZ_CP038816
Coordinates   3177979..3178389 (-) Length   136 a.a.
NCBI ID   WP_106466410.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3172979..3183389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS15500 (KAN01_15500) - 3173064..3173333 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  KAN01_RS15505 (KAN01_15505) rapZ 3173330..3174181 (-) 852 WP_002054547.1 RNase adapter RapZ -
  KAN01_RS15510 (KAN01_15510) panC 3174204..3175052 (-) 849 WP_135925424.1 pantoate--beta-alanine ligase -
  KAN01_RS15515 (KAN01_15515) panB 3175056..3175865 (-) 810 WP_106479527.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KAN01_RS15520 (KAN01_15520) folK 3175911..3176393 (-) 483 WP_006581366.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KAN01_RS15525 (KAN01_15525) pcnB 3176390..3177853 (-) 1464 WP_135925426.1 polynucleotide adenylyltransferase PcnB -
  KAN01_RS15530 (KAN01_15530) comEA 3177979..3178389 (-) 411 WP_106466410.1 ComEA family DNA-binding protein Machinery gene
  KAN01_RS15535 (KAN01_15535) mazG 3178358..3179164 (-) 807 WP_135925428.1 nucleoside triphosphate pyrophosphohydrolase -
  KAN01_RS15540 (KAN01_15540) - 3179277..3180050 (+) 774 WP_002054535.1 SDR family oxidoreductase -
  KAN01_RS15545 (KAN01_15545) - 3180096..3182402 (-) 2307 WP_002054537.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15644.05 Da        Isoelectric Point: 10.4097

>NTDB_id=355744 KAN01_RS15530 WP_106466410.1 3177979..3178389(-) (comEA) [Acinetobacter nosocomialis strain KAN01]
MRYSMRLWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKSSHSYGSKIYQTKSLNDSTGQIHLNQ
ATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=355744 KAN01_RS15530 WP_106466410.1 3177979..3178389(-) (comEA) [Acinetobacter nosocomialis strain KAN01]
ATGCGATACAGCATGAGACTTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCACCTTCGGT
TTTTGCTCAATCGTTTGATCAGAATTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AATCTTCTCATTCTTATGGTTCTAAAATTTATCAAACGAAGAGTTTAAATGATTCTACTGGGCAGATTCATTTAAATCAG
GCTACTGTAAATGAGTTTCGGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTGGAATACAGGCAAAAGAA
TGGTGGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGACCCGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

87.5

100

0.875
  comEA Acinetobacter baumannii D1279779

87.5

100

0.875
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397

Multiple sequence alignment