Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPY45_RS10435 Genome accession   NZ_CP046785
Coordinates   2083596..2084195 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 2013V-1136     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2078596..2089195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY45_RS25685 - 2079747..2079878 (+) 132 WP_005380608.1 hypothetical protein -
  GPY45_RS10415 - 2079951..2080298 (+) 348 WP_023585236.1 YbaN family protein -
  GPY45_RS10420 apt 2080464..2081009 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  GPY45_RS10425 dnaX 2081018..2083153 (+) 2136 WP_025499568.1 DNA polymerase III subunit gamma/tau -
  GPY45_RS10430 - 2083237..2083566 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  GPY45_RS10435 recR 2083596..2084195 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  GPY45_RS10440 aqpZ 2084247..2084945 (-) 699 WP_005460095.1 aquaporin Z -
  GPY45_RS10445 - 2085152..2086410 (-) 1259 Protein_1843 hypothetical protein -
  GPY45_RS10450 - 2086728..2087108 (+) 381 WP_005479566.1 RidA family protein -
  GPY45_RS10455 - 2087124..2088401 (+) 1278 WP_005479508.1 serine dehydratase subunit alpha family protein -
  GPY45_RS10460 - 2088430..2089089 (+) 660 WP_005397228.1 transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=355740 GPY45_RS10435 WP_005460088.1 2083596..2084195(+) (recR) [Vibrio parahaemolyticus strain 2013V-1136]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=355740 GPY45_RS10435 WP_005460088.1 2083596..2084195(+) (recR) [Vibrio parahaemolyticus strain 2013V-1136]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCGGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment