Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   KAN01_RS12220 Genome accession   NZ_CP038816
Coordinates   2525928..2526635 (+) Length   235 a.a.
NCBI ID   WP_135925178.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2520928..2531635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS12205 (KAN01_12205) - 2523747..2524552 (+) 806 Protein_2371 peptidoglycan DD-metalloendopeptidase family protein -
  KAN01_RS12210 (KAN01_12210) - 2524549..2524974 (-) 426 WP_135925177.1 GNAT family N-acetyltransferase -
  KAN01_RS12215 (KAN01_12215) - 2525066..2525488 (-) 423 WP_001195082.1 OsmC family protein -
  KAN01_RS12220 (KAN01_12220) crp 2525928..2526635 (+) 708 WP_135925178.1 cAMP-activated global transcriptional regulator CRP Regulator
  KAN01_RS12225 (KAN01_12225) - 2526796..2527845 (+) 1050 WP_032048532.1 NADP(H)-dependent aldo-keto reductase -
  KAN01_RS12230 (KAN01_12230) - 2527903..2528685 (-) 783 WP_017393664.1 M48 family metallopeptidase -
  KAN01_RS12235 (KAN01_12235) - 2528802..2529119 (-) 318 WP_032048534.1 hypothetical protein -
  KAN01_RS12240 (KAN01_12240) - 2529246..2530565 (-) 1320 WP_135925180.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26511.12 Da        Isoelectric Point: 4.6625

>NTDB_id=355740 KAN01_RS12220 WP_135925178.1 2525928..2526635(+) (crp) [Acinetobacter nosocomialis strain KAN01]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEETAVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=355740 KAN01_RS12220 WP_135925178.1 2525928..2526635(+) (crp) [Acinetobacter nosocomialis strain KAN01]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAGCGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCAGA
AATTTCATATGACAACTTCCATGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTTGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACTGACCTTGCCTTCATTGATGTGTCTGGTCGTATTGCGCGTTGCTTAATCGAC
TTATCTTCACAACCAGAGGCAATGATTTTGCCGAATGGTCGTCAAATTCGTATTACCCGTCAAGAAATTGGACGTATTGT
CGGTTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATCCAGACAGATGGTAAGGCTA
TTCTTATTTTTGATGCATCATTAGAAGAAACTGCGGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.723

100

0.987
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment