Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KAN01_RS01540 Genome accession   NZ_CP038816
Coordinates   321827..322567 (+) Length   246 a.a.
NCBI ID   WP_004711658.1    Uniprot ID   A0AB36M2H9
Organism   Acinetobacter nosocomialis strain KAN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316827..327567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS01525 (KAN01_01525) ponA 317408..319966 (-) 2559 WP_031982123.1 penicillin-binding protein PBP1a -
  KAN01_RS01530 (KAN01_01530) comM 320128..321186 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  KAN01_RS01535 (KAN01_01535) pilN 321186..321830 (+) 645 WP_135924485.1 PilN domain-containing protein Machinery gene
  KAN01_RS01540 (KAN01_01540) pilO 321827..322567 (+) 741 WP_004711658.1 type 4a pilus biogenesis protein PilO Machinery gene
  KAN01_RS01545 (KAN01_01545) pilP 322578..323105 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  KAN01_RS01550 (KAN01_01550) pilQ 323168..325333 (+) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  KAN01_RS01555 (KAN01_01555) aroK 325345..325914 (+) 570 WP_002051689.1 shikimate kinase AroK -
  KAN01_RS01560 (KAN01_01560) aroB 325943..327025 (+) 1083 WP_004884725.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27615.41 Da        Isoelectric Point: 4.9673

>NTDB_id=355718 KAN01_RS01540 WP_004711658.1 321827..322567(+) (pilO) [Acinetobacter nosocomialis strain KAN01]
MSQDELQELSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
GNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVVEAAPAKDSKSDIPVLNYSIKAKTYRYIGAPEPSAQPAKAAAANAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=355718 KAN01_RS01540 WP_004711658.1 321827..322567(+) (pilO) [Acinetobacter nosocomialis strain KAN01]
ATGAGTCAAGATGAACTGCAAGAATTATCATTAGAGCAATCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACTTGCTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCCCAAGCTCAGGAA
GGTAATTTATTAAATGAATTTCGAGAAAAAGACTCGAAATTACGTAATCTTCAGCAGTATCAAGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAATTAGAACAATTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATCCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTTGTAAGTAGTATCTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTGTAGAGGCTGCTCCAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCACCAGAGCCATCGGCACAACCAGCTAAGGCTGCAGCGGCGAATGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.431

100

0.894
  comO Acinetobacter baylyi ADP1

70.492

99.187

0.699

Multiple sequence alignment