Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KAN01_RS01535 Genome accession   NZ_CP038816
Coordinates   321186..321830 (+) Length   214 a.a.
NCBI ID   WP_135924485.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316186..326830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS01515 (KAN01_01515) - 316231..316563 (+) 333 WP_002051722.1 hypothetical protein -
  KAN01_RS01520 (KAN01_01520) - 316566..317390 (+) 825 WP_100222400.1 putative RNA methyltransferase -
  KAN01_RS01525 (KAN01_01525) ponA 317408..319966 (-) 2559 WP_031982123.1 penicillin-binding protein PBP1a -
  KAN01_RS01530 (KAN01_01530) comM 320128..321186 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  KAN01_RS01535 (KAN01_01535) pilN 321186..321830 (+) 645 WP_135924485.1 PilN domain-containing protein Machinery gene
  KAN01_RS01540 (KAN01_01540) pilO 321827..322567 (+) 741 WP_004711658.1 type 4a pilus biogenesis protein PilO Machinery gene
  KAN01_RS01545 (KAN01_01545) pilP 322578..323105 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  KAN01_RS01550 (KAN01_01550) pilQ 323168..325333 (+) 2166 WP_004884727.1 type IV pilus secretin PilQ family protein Machinery gene
  KAN01_RS01555 (KAN01_01555) aroK 325345..325914 (+) 570 WP_002051689.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24216.57 Da        Isoelectric Point: 6.0119

>NTDB_id=355717 KAN01_RS01535 WP_135924485.1 321186..321830(+) (pilN) [Acinetobacter nosocomialis strain KAN01]
MATINLLSWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=355717 KAN01_RS01535 WP_135924485.1 321186..321830(+) (pilN) [Acinetobacter nosocomialis strain KAN01]
ATGGCAACAATTAACTTACTATCTTGGCGTGAAGAGCTAAGGGAACAACGAAAAAAACAATTTATAACTCTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACAGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGATAAGCCAGCCGTAGCGAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

90.654

100

0.907
  comN Acinetobacter baylyi ADP1

72

93.458

0.673

Multiple sequence alignment