Detailed information NTG0355649

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: AGP54_RS01115
• Genome accession: NZ_CP038809
• Coordinates: 189309..189722 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SS1168
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 184309..194722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AGP54_RS01095 (AGP54_01105)	-	186562..186927 (+)	366	WP_000285373.1	DUF1033 family protein	-
AGP54_RS01100 (AGP54_01115)	comYA	187100..188071 (+)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
AGP54_RS01105 (AGP54_01120)	comYB	187965..189008 (+)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
AGP54_RS01110 (AGP54_01125)	comGC/cglC	189005..189334 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
AGP54_RS01115 (AGP54_01130)	comYD	189309..189722 (+)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
AGP54_RS01120 (AGP54_01135)	comGE	189694..189993 (+)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
AGP54_RS01125 (AGP54_01140)	comGF	189947..190408 (+)	462	WP_001878820.1	competence type IV pilus minor pilin ComGF	-
AGP54_RS01130 (AGP54_01145)	comGG	190386..190757 (+)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
AGP54_RS01135 (AGP54_01150)	comYH	190872..191846 (+)	975	WP_001008574.1	class I SAM-dependent methyltransferase	Machinery gene
AGP54_RS01140 (AGP54_01155)	-	191878..193071 (+)	1194	WP_000047534.1	acetate kinase	-
AGP54_RS01145 (AGP54_01160)	-	193223..193429 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
AGP54_RS01150 (AGP54_01165)	-	193488..193625 (+)	138	WP_001865900.1	hypothetical protein	-
AGP54_RS01155 (AGP54_01170)	-	193666..194121 (+)	456	WP_000905673.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=355649 AGP54_RS01115 WP_000244261.1 189309..189722(+) (comYD) [Streptococcus agalactiae strain SS1168]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=355649 AGP54_RS01115 WP_000244261.1 189309..189722(+) (comYD) [Streptococcus agalactiae strain SS1168]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394