Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP   Type   Regulator
Locus tag   BAMTA208_RS08975 Genome accession   NC_017188
Coordinates   1827532..1829475 (-) Length   647 a.a.
NCBI ID   WP_014470409.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822532..1834475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS08945 (BAMTA208_09230) - 1824206..1824568 (-) 363 WP_013352224.1 Asp23/Gls24 family envelope stress response protein -
  BAMTA208_RS08950 (BAMTA208_09235) rpmB 1824828..1825016 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  BAMTA208_RS08955 (BAMTA208_09240) spoVM 1825093..1825173 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  BAMTA208_RS08960 (BAMTA208_09245) - 1825260..1825904 (-) 645 WP_013352223.1 thiamine diphosphokinase -
  BAMTA208_RS08965 (BAMTA208_09250) rpe 1825972..1826625 (-) 654 WP_014470407.1 ribulose-phosphate 3-epimerase -
  BAMTA208_RS08970 (BAMTA208_09255) rsgA 1826627..1827517 (-) 891 WP_014470408.1 ribosome small subunit-dependent GTPase A -
  BAMTA208_RS08975 (BAMTA208_09260) stkP 1827532..1829475 (-) 1944 WP_014470409.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  BAMTA208_RS08980 (BAMTA208_09265) - 1829469..1830230 (-) 762 WP_014470410.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  BAMTA208_RS08985 (BAMTA208_09270) rlmN 1830236..1831327 (-) 1092 WP_014470411.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BAMTA208_RS08990 (BAMTA208_09275) rsmB 1831331..1832674 (-) 1344 WP_013352217.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BAMTA208_RS08995 (BAMTA208_09280) fmt 1832661..1833614 (-) 954 WP_013352216.1 methionyl-tRNA formyltransferase -
  BAMTA208_RS09000 (BAMTA208_09285) def 1833619..1834101 (-) 483 WP_013352215.1 peptide deformylase -

Sequence

Protein


Download         Length: 647 a.a.        Molecular weight: 71542.16 Da        Isoelectric Point: 4.9805

>NTDB_id=35524 BAMTA208_RS08975 WP_014470409.1 1827532..1829475(-) (stkP) [Bacillus amyloliquefaciens TA208]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYITAHGPLHPKEALSVMEQIVSAIAHAHHNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKMPFDGESAVSIALKHLQAETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAIAAPQAETPAETDDKEQPSA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKEVSVPDVRGMKYEKAEALLEKNGLQADPDMTDIEDEKIEEGLMV
KTDPKAGSAVKEGSSVKLYKSIGKPKTRLIDVKGRPIDDAKKTLKDKGFKHVNVKEENDDSAAGTVIDQNPSAGTDMVAS
DDEVSLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKEAHSDDVPEGQVMKQEPSAGTAVKPGSDVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=35524 BAMTA208_RS08975 WP_014470409.1 1827532..1829475(-) (stkP) [Bacillus amyloliquefaciens TA208]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCGAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAGATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTTGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGACATTTATTATATTGTCATGGAATATGTGGAAGGCATGACGTTAAAGGAATACATAACCGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCTGTTATGGAGCAGATCGTCTCAGCCATCGCCCATGCCCATCATAACCATATCGTGCACCGGG
ATATCAAACCGCACAATATTTTGATAGATCATTTAGGACATATTAAGGTGACGGATTTCGGCATCGCCACAGCTCTCACT
TCGACGACAATCACACATACGAATTCTGTGCTCGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCGGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGCAAAATGCCTTTTGACGGAGAAT
CAGCCGTCAGCATTGCGTTAAAGCACCTGCAAGCAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTGGAAAACATTATTTTAAAGGCAACCGCCAAAGACCCGTTTCACCGCTATGAAAGCGCAGAGGACATGGAAGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTCTCCGTGCAGGATGATGAGGAAATGACGAAAGCGATTC
CCGTTATTACTGACGGTGCGATAGCCGCGCCGCAGGCGGAAACGCCGGCAGAGACGGATGATAAAGAACAGCCGTCCGCC
AAAAAGAAGAAACGGAAATGGCCGTGGGTTTTGCTGGCTGTCTGCTTTATTTTCATAATGGCGGCTGTTCTTGCGGTCAC
CGTGTTCCCGTCTTTGTTTATGCCAAAAGAGGTAAGCGTCCCCGATGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGCCTCCAAGCGGATCCTGATATGACGGACATTGAAGATGAAAAAATCGAAGAGGGATTAATGGTC
AAAACTGATCCGAAAGCGGGTTCTGCCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGGAAACCGAAAAC
CCGGCTGATTGACGTGAAAGGCCGGCCGATCGATGATGCGAAAAAAACGCTTAAGGATAAAGGCTTCAAACATGTCAATG
TAAAAGAAGAGAACGATGACAGTGCGGCTGGCACTGTAATTGATCAGAACCCATCAGCCGGCACCGACATGGTCGCAAGT
GATGATGAAGTCAGCTTAACAGTCAGCCTCGGACCGGCGGACGTTACGCTGAGAGACTTAAAAACATACAGCAAAGAAGC
GGCTTCCGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAGGAAGCTCACTCAGATGACGTGCCTGAGGGACAGG
TCATGAAGCAAGAGCCGTCAGCCGGCACTGCGGTTAAGCCGGGAAGTGATGTTGAAGTAACGTTTTCGCTCGGGCCTGAA
GAAAAACCGGCCAAAACGGTAAAAGAAAAAATCAGCATCCCCTACGAACCCGAACATGAAGGGGACGAGCTCGAAGTGCA
AATCGCCATCGATGATAAAGACCACAGCATCTCTGATACGTATGATTCGTTTAAAATAAAAGAACCGACTGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA

Domains

Predicted by InterProScan.

PASTA domain (PASTA)

(431-489)

PASTA domain (PASTA)

(495-556)

PASTA domain (PASTA)

(358-419)

Protein kinase domain (Pkinase)

(11-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.636

95.209

0.368
  stkP Streptococcus pneumoniae D39

38.312

95.209

0.365
  stkP Streptococcus pneumoniae R6

38.312

95.209

0.365
  stkP Streptococcus pneumoniae Rx1

38.149

95.209

0.363

Multiple sequence alignment