Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPY19_RS07225 Genome accession   NZ_CP046763
Coordinates   1466686..1468767 (-) Length   693 a.a.
NCBI ID   WP_154119463.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461686..1473767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS07205 - 1462269..1462661 (+) 393 WP_025510651.1 DUF1090 domain-containing protein -
  GPY19_RS07210 ompR 1462880..1463599 (+) 720 WP_005459027.1 two-component system response regulator OmpR -
  GPY19_RS07215 envZ 1463705..1464997 (+) 1293 WP_005459014.1 two-component system sensor histidine kinase EnvZ -
  GPY19_RS07220 - 1465062..1466453 (-) 1392 WP_005459007.1 uracil-xanthine permease family protein -
  GPY19_RS07225 recG 1466686..1468767 (-) 2082 WP_154119463.1 ATP-dependent DNA helicase RecG Machinery gene
  GPY19_RS07230 trmH 1468886..1469569 (-) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  GPY19_RS07235 spoT 1469627..1471747 (-) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPY19_RS07240 rpoZ 1471787..1472059 (-) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  GPY19_RS07245 gmk 1472241..1472864 (-) 624 WP_005496750.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76750.81 Da        Isoelectric Point: 7.9784

>NTDB_id=355206 GPY19_RS07225 WP_154119463.1 1466686..1468767(-) (recG) [Vibrio parahaemolyticus strain 2012AW-0353]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALVLLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPSINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEAMGIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQTVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPTNAAAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=355206 GPY19_RS07225 WP_154119463.1 1466686..1468767(-) (recG) [Vibrio parahaemolyticus strain 2012AW-0353]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTGCCTCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCTGCAGTACAAGGCAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGACGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACCGATGGCCTGCGTCAA
ATCACTTTACGTAACCTTACTGAGCAAGCATTGGTGCTACTCGATAAAGCGGCAGTGCAAGAATTGCTACCTTCTGGCTT
GTATAACCATCAGATTACTATGTCGCAGGCGTTGCACACCATTCATCGCCCGCCGCCAAGCATTAATTTAGATGAATTTG
ATGAAGGTAAGCACCCCGCTCAAATCCGTTTGATCATGGAAGAGTTGCTCGCTCAGAACTTATCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCTTT
CTCCCCAACTAATGCTCAAGCACGTGTGGTGAAAGAGATTGAAGCCGACCTCGAAAAACCGCATCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGAAAAACCCTCGTCGCGGCACTGGCTGCGGTTCGAGCTATCGAGCACGGTTATCAGGTC
GCACTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGGCATTCA
AGTTGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCGACTCCGATTCCTCGCACGCTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACACCGATTCAAACCGTCGCCATTCCAGATACCAAACGTGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTAATCGATGAATCAGAAGTGTTAGAAGCGCAAGCCGCAGCAGACAC
CGCTGAAGAGCTGCAGCGCAAACTGCCAGATGTAAAAATTGGCTTGGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAA
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCGCAATTACATCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACTCCCCCCTGTCGAAAACCGCGCAAAAACGCCTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTGATTGCGCAGAAAGACCTAGAGATCCGCGGGCCCGGCGAATTATTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATTCCCGAAGTTCAACGTATTGCACGTCA
TATTCACGACAATTACCCAACCAATGCAGCCGCCATCATCGATCGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

RecG wedge domain (RecG_wedge)

(15-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.405

96.97

0.479
  recG/mmsA Streptococcus pneumoniae R6

40.299

96.681

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.299

96.681

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

39.818

94.949

0.378