Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPY27_RS14425 Genome accession   NZ_CP046761
Coordinates   2909698..2911779 (+) Length   693 a.a.
NCBI ID   WP_140094377.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM46865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2904698..2916779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS14405 gmk 2905601..2906224 (+) 624 WP_005496750.1 guanylate kinase -
  GPY27_RS14410 rpoZ 2906406..2906678 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  GPY27_RS14415 spoT 2906718..2908838 (+) 2121 WP_005459012.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPY27_RS14420 trmH 2908896..2909579 (+) 684 WP_005478720.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  GPY27_RS14425 recG 2909698..2911779 (+) 2082 WP_140094377.1 ATP-dependent DNA helicase RecG Machinery gene
  GPY27_RS14430 - 2912012..2913403 (+) 1392 WP_005459007.1 uracil-xanthine permease family protein -
  GPY27_RS14435 envZ 2913468..2914760 (-) 1293 WP_140094375.1 two-component system sensor histidine kinase EnvZ -
  GPY27_RS14440 ompR 2914866..2915585 (-) 720 WP_005459027.1 two-component system response regulator OmpR -
  GPY27_RS14445 - 2915804..2916196 (-) 393 WP_024703489.1 DUF1090 domain-containing protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76778.82 Da        Isoelectric Point: 7.7610

>NTDB_id=355142 GPY27_RS14425 WP_140094377.1 2909698..2911779(+) (recG) [Vibrio parahaemolyticus strain AM46865]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMTVDTIFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSQGKLVHAYGEIKRGGMGLEIVHPDYKFYASEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALALLDKAAVQELLPSGLYNHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDIALPLAPCDKLKKQLLAQLPFSPTNAQARVVKEIESDLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEAMDIQVGWLAGKLKGKAKETELARIASGEAQMIVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQEFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARHIHDNYPTNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=355142 GPY27_RS14425 WP_140094377.1 2909698..2911779(+) (recG) [Vibrio parahaemolyticus strain AM46865]
ATGTCTGCCCAAATGCTATCTGCTGTTCCTTTAACTTCTCTATCAGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCTAA
AGTCGGCTTGCATAGCGTTCAAGATTTGTTGTTCCACCTACCTCTACGCTACGAAGATCGCACCCGCATTTATCCTATTG
CCAAACTGCACGCAGGCCTTTGGGCTGCGGTACAAGGCAAAGTCATGACCGTCGATACCATTTTTGGTAAACGCAAAATG
CTGACAGTCAAAATCAGTGATGGCAATGGCACCATCACGCTGCGTTTTTTCAACTTTACTGCAGCGATGAAGAACAATTT
TTCACAGGGTAAGTTAGTACACGCTTACGGAGAAATTAAGCGTGGTGGTATGGGGCTGGAAATTGTGCACCCTGACTACA
AATTTTACGCCAGTGAACAAAAGCCAGATGTGGAACAAAGCTTAACCCCGGTTTATCCAACCACAGATGGCCTGCGTCAA
ATCACCTTACGCAACCTGACTGAGCAAGCATTGGCGCTACTCGATAAAGCAGCCGTGCAAGAGTTGCTGCCTTCGGGCTT
GTACAACCACCAAATTACCATGTCGCAGGCATTGCACACCATTCATCGCCCACCACCAACCATCAATTTAGATGAGTTTG
ATGAAGGTAAGCATCCCGCTCAAATCCGTTTGATCATGGAAGAATTGCTCGCTCAGAACTTGTCGATGTTGGCGGTTCGC
AGCAAAGGCCAGCAAGATATCGCCTTACCGCTCGCACCATGTGACAAACTGAAAAAACAGCTGTTGGCGCAACTGCCGTT
TTCTCCGACCAATGCTCAAGCACGCGTGGTGAAAGAGATTGAATCCGACCTCGAAAAGCCGCACCCAATGATGCGTCTTG
TCCAAGGTGACGTAGGCTCAGGAAAAACATTGGTTGCCGCGCTAGCCGCGGTCAGAGCCATTGAGCACGGTTACCAAGTG
GCTTTAATGGCACCAACTGAGCTGCTCGCCGAACAACACGCCATCAATTTCGCCAACTGGTTTGAAGCCATGGACATTCA
AGTGGGCTGGCTTGCTGGTAAGCTCAAGGGCAAAGCCAAAGAGACGGAACTGGCTCGCATTGCCAGCGGTGAAGCGCAAA
TGATAGTGGGTACTCACGCCCTCTTCCAAGAACATGTGGAATTTCATCACCTAGCTTTAGTCATCATTGATGAGCAGCAC
CGCTTTGGCGTCCATCAGCGATTAGAGTTACGTGAGAAAGGGGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGAC
GGCGACTCCGATTCCTCGCACGCTAGCAATGACAGCGTATGCTGATTTGGAAACGTCGGTGATAGACGAATTACCACCAG
GCCGAACGCCGATTCAAACCGTCGCCATTCCAGATACCAAACGTGACGACATTGTCGAGCGGGTACGAAACGCTTGTCTT
AACGAAGGCAAGCAAGCGTATTGGGTGTGTACGCTGATCGATGAATCGGAAGTGTTGGAAGCTCAAGCCGCAGCAGACAC
CGCCGAAGAGTTGCAGCGCAAACTGCCAGATGTAAAAATTGGCCTAGTTCATGGCCGTATGAAGCCCGCCGAAAAGCAAG
CTGTCATGCAAGAGTTTAAAGACAACAAGCTCCACCTGCTCGTAGCCACGACGGTGATAGAAGTTGGCGTAGACGTGCCA
AACTCTAGCTTGATGATCATCGAAAACCCTGAACGCCTTGGTTTGGCTCAATTACACCAGTTAAGAGGCCGCGTCGGTCG
AGGCTCGGTTGCCAGTCACTGTGTCCTGCTGTACCACGCCCCTCTGTCGAAAACCGCGCAAAAACGCCTCGGTGTGCTGC
GTGAAAGTAACGATGGCTTTGTTATTGCGCAGAAAGACCTAGAGATCCGTGGGCCCGGCGAATTATTGGGCACCAAACAA
ACAGGCTTGGCTGATTTCAAAATTGCCGATTTAGTTCGAGATCAACGCTTAATTCCCGAAGTTCAACGTATTGCACGTCA
TATTCACGACAATTACCCAACCAATGCAGCCGCCATTATCGAACGCTGGCTAGGCGAGCGTGATATCTACTCCAAAGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.299

96.681

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.299

96.681

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

39.818

94.949

0.378

Multiple sequence alignment