Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PECWA_RS17725 Genome accession   NC_013421
Coordinates   3974645..3975661 (-) Length   338 a.a.
NCBI ID   WP_015731139.1    Uniprot ID   -
Organism   Pectobacterium parmentieri WPP163     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3969645..3980661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PECWA_RS17710 (Pecwa_3603) nsrR 3970054..3970479 (-) 426 WP_005974824.1 nitric oxide-sensing transcriptional repressor NsrR -
  PECWA_RS17715 (Pecwa_3604) - 3970768..3972339 (+) 1572 WP_015731137.1 methyl-accepting chemotaxis protein -
  PECWA_RS17720 (Pecwa_3605) - 3972844..3974676 (+) 1833 WP_015731138.1 diguanylate cyclase -
  PECWA_RS17725 (Pecwa_3606) pilT 3974645..3975661 (-) 1017 WP_015731139.1 type IV pilus twitching motility protein PilT Machinery gene
  PECWA_RS17730 (Pecwa_3607) - 3975683..3976396 (+) 714 WP_015731140.1 YggS family pyridoxal phosphate-dependent enzyme -
  PECWA_RS17735 (Pecwa_3608) proC 3976473..3977294 (+) 822 WP_015731141.1 pyrroline-5-carboxylate reductase -
  PECWA_RS17740 (Pecwa_3609) - 3977344..3977913 (+) 570 WP_014701257.1 YggT family protein -
  PECWA_RS17745 (Pecwa_3610) yggU 3977910..3978200 (+) 291 WP_014701258.1 DUF167 family protein YggU -
  PECWA_RS17750 (Pecwa_3611) - 3978218..3978811 (+) 594 WP_014701259.1 XTP/dITP diphosphatase -
  PECWA_RS17755 (Pecwa_3612) hemW 3978804..3979943 (+) 1140 WP_014701260.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36978.32 Da        Isoelectric Point: 6.3640

>NTDB_id=35510 PECWA_RS17725 WP_015731139.1 3974645..3975661(-) (pilT) [Pectobacterium parmentieri WPP163]
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTPEQVAQWCDAWLEPVQREQLRQIGQVDGTLMLPDGQ
RLRVNVFHQREGLSVALRIIPFFQPSLDELHAPPVLATLLEKPNGLILITGATGSGKSTTLAAMVGALNDSSDRHVITLE
DPIEFIHTSRRCLIQQREIGAHSASFAQALRAALREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSAPQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVAQKLLPAAQGGRIALYEVLTATAAVSNLIREGKTHQLPGLMQTGVAAGMQTFEQS
DQQRCRDGLISHSYALAV

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=35510 PECWA_RS17725 WP_015731139.1 3974645..3975661(-) (pilT) [Pectobacterium parmentieri WPP163]
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCGGATCTGCACCTTTGTAGCGGGCACCCTCCGGT
GTTACGTGTGGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGCCGGAACAGGTGGCACAATGGTGTGATG
CCTGGCTCGAACCGGTTCAGAGAGAGCAGTTGCGGCAGATTGGGCAAGTGGACGGCACGTTAATGTTGCCTGATGGGCAA
CGGCTGCGGGTCAATGTGTTTCACCAGCGGGAAGGGCTGTCTGTCGCGCTGCGTATTATCCCGTTTTTTCAACCTTCATT
GGATGAATTACATGCGCCACCCGTTCTTGCGACGCTGTTGGAGAAACCAAATGGACTGATCCTGATTACTGGTGCGACGG
GCAGCGGTAAATCTACGACGTTGGCGGCAATGGTCGGGGCGTTAAATGACAGCAGCGATCGCCATGTGATCACGTTGGAA
GATCCGATCGAATTTATTCATACCAGCCGACGCTGCCTGATCCAACAACGAGAGATCGGTGCACACAGCGCGTCTTTTGC
GCAGGCGCTACGGGCGGCATTAAGGGAAGATCCCGATGTTATTCTACTGGGAGAACTGCGCGATACGGAGACGATTCGGC
TGGCGTTAACGGCGGCAGAAACCGGCCATCTGGTGCTGTCAACGTTACATACACGTAGTGCACCGCAGGCTGTTGATCGG
TTGATTGATGTCTTCCCCGGTGAAGAGAAAGCGTATGTTCGCAGCCAGTTAGCCACCTGTTTGCAGGCCGTGGTGGCGCA
AAAATTGTTGCCCGCAGCACAAGGTGGCCGAATCGCGCTGTATGAAGTGCTGACTGCCACCGCGGCAGTCAGCAACTTGA
TTCGTGAGGGGAAAACGCACCAGCTTCCCGGCCTGATGCAAACCGGAGTTGCTGCGGGAATGCAAACGTTCGAACAAAGC
GACCAGCAGCGTTGCCGGGATGGGCTTATTTCACACAGTTACGCCCTTGCCGTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.909

97.633

0.497
  pilT Vibrio cholerae strain A1552

50.909

97.633

0.497
  pilT Neisseria meningitidis 8013

50.301

98.225

0.494
  pilT Neisseria gonorrhoeae MS11

50

98.225

0.491
  pilT Legionella pneumophila strain Lp02

48.06

99.112

0.476
  pilT Legionella pneumophila strain ERS1305867

48.06

99.112

0.476
  pilT Acinetobacter baylyi ADP1

47.633

100

0.476
  pilT Pseudomonas aeruginosa PAK

47.761

99.112

0.473
  pilT Pseudomonas stutzeri DSM 10701

47.761

99.112

0.473
  pilT Acinetobacter nosocomialis M2

47.13

97.929

0.462
  pilT Acinetobacter baumannii D1279779

47.13

97.929

0.462
  pilT Acinetobacter baumannii strain A118

47.13

97.929

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.433

99.704

0.423
  pilU Pseudomonas stutzeri DSM 10701

40.653

99.704

0.405
  pilU Vibrio cholerae strain A1552

39.169

99.704

0.391
  pilU Acinetobacter baylyi ADP1

39.13

95.266

0.373

Multiple sequence alignment