Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | BAMTA208_RS07875 | Genome accession | NC_017188 |
| Coordinates | 1555487..1555849 (-) | Length | 120 a.a. |
| NCBI ID | WP_013352421.1 | Uniprot ID | A0A9P1JH52 |
| Organism | Bacillus amyloliquefaciens TA208 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1550487..1560849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMTA208_RS07850 (BAMTA208_08090) | sspO | 1553438..1553584 (+) | 147 | WP_003153982.1 | acid-soluble spore protein SspO | - |
| BAMTA208_RS07855 (BAMTA208_08095) | - | 1553614..1553760 (+) | 147 | WP_003153984.1 | small acid-soluble spore protein P | - |
| BAMTA208_RS07860 (BAMTA208_08100) | - | 1553854..1554225 (+) | 372 | WP_013352424.1 | spore coat protein | - |
| BAMTA208_RS07865 (BAMTA208_08105) | - | 1554460..1554888 (+) | 429 | WP_013352423.1 | DUF2621 domain-containing protein | - |
| BAMTA208_RS07870 (BAMTA208_08110) | - | 1554916..1555407 (-) | 492 | WP_088030532.1 | CcdC family protein | - |
| BAMTA208_RS07875 (BAMTA208_08115) | pilH | 1555487..1555849 (-) | 363 | WP_013352421.1 | response regulator | Machinery gene |
| BAMTA208_RS07880 (BAMTA208_08120) | - | 1555934..1556641 (-) | 708 | WP_088030531.1 | cytochrome c biogenesis protein CcdA | - |
| BAMTA208_RS07885 (BAMTA208_08125) | - | 1556843..1557016 (+) | 174 | WP_088030684.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| BAMTA208_RS07890 (BAMTA208_08130) | - | 1557089..1557307 (-) | 219 | WP_003153994.1 | YneF family protein | - |
| BAMTA208_RS07895 (BAMTA208_08135) | sirA | 1557393..1557839 (-) | 447 | WP_013352418.1 | sporulation inhibitor of replication protein SirA | - |
| BAMTA208_RS07900 (BAMTA208_08140) | recP/tkt | 1557990..1559993 (-) | 2004 | WP_013352417.1 | transketolase | Machinery gene |
| BAMTA208_RS07905 (BAMTA208_08145) | - | 1560160..1560393 (-) | 234 | WP_003153997.1 | DUF896 domain-containing protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13259.62 Da Isoelectric Point: 5.2063
>NTDB_id=35509 BAMTA208_RS07875 WP_013352421.1 1555487..1555849(-) (pilH) [Bacillus amyloliquefaciens TA208]
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT
Nucleotide
Download Length: 363 bp
>NTDB_id=35509 BAMTA208_RS07875 WP_013352421.1 1555487..1555849(-) (pilH) [Bacillus amyloliquefaciens TA208]
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACGGCCATGCGGCAGCAGCGGATTGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCAGTAGGCAGGGTGACGGGAACGTAA
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACGGCCATGCGGCAGCAGCGGATTGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCAGTAGGCAGGGTGACGGGAACGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
36.667 |
100 |
0.367 |