Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PECWA_RS17970 Genome accession   NC_013421
Coordinates   4033035..4033577 (+) Length   180 a.a.
NCBI ID   WP_014701314.1    Uniprot ID   A0AAE9SYY7
Organism   Pectobacterium parmentieri WPP163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4028035..4038577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PECWA_RS17960 (Pecwa_3660) - 4029514..4029933 (-) 420 WP_015731174.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PECWA_RS17965 (Pecwa_3661) uvrA 4029951..4032785 (-) 2835 WP_014701313.1 excinuclease ABC subunit UvrA -
  PECWA_RS17970 (Pecwa_3662) ssb 4033035..4033577 (+) 543 WP_014701314.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PECWA_RS17975 (Pecwa_3663) - 4033812..4035653 (+) 1842 WP_015731175.1 amidohydrolase -
  PECWA_RS17980 (Pecwa_3664) - 4035885..4036340 (+) 456 WP_015731176.1 GNAT family N-acetyltransferase -
  PECWA_RS17985 (Pecwa_3665) - 4036408..4036998 (+) 591 WP_015731177.1 hypothetical protein -
  PECWA_RS17990 (Pecwa_3666) - 4037110..4037541 (-) 432 WP_014701318.1 carboxymuconolactone decarboxylase family protein -
  PECWA_RS17995 (Pecwa_3667) - 4037682..4038113 (-) 432 WP_015731178.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19099.08 Da        Isoelectric Point: 5.2456

>NTDB_id=35511 PECWA_RS17970 WP_014701314.1 4033035..4033577(+) (ssb) [Pectobacterium parmentieri WPP163]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=35511 PECWA_RS17970 WP_014701314.1 4033035..4033577(+) (ssb) [Pectobacterium parmentieri WPP163]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTTGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAATGCAGGTGGCGGTCAGCAGCAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAATTCAGCGGCGGTGCGCAAGCTCAGCAGCGTCCGGCACAG
AACAGCGCGCCCGCACAAAGTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment