Detailed information NTG0354952

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E5E96_RS04845
• Genome accession: NZ_CP038515
• Coordinates: 1019383..1020255 (+)
• Length: 290 a.a.
• NCBI ID: WP_171281660.1
• Uniprot ID: -
• Organism: Aeromonas sp. 1805
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1014383..1025255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5E96_RS04825 (E5E96_04845)	nadC	1014694..1015551 (+)	858	WP_166464211.1	carboxylating nicotinate-nucleotide diphosphorylase	-
E5E96_RS04830 (E5E96_04855)	tapA	1015874..1016290 (+)	417	WP_042066959.1	type IVa pilus major pilin TapA	-
E5E96_RS04835 (E5E96_04860)	pilB	1016297..1018003 (+)	1707	WP_017409440.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
E5E96_RS04840 (E5E96_04865)	pilC	1018119..1019360 (+)	1242	WP_043126919.1	type II secretion system F family protein	Machinery gene
E5E96_RS04845 (E5E96_04870)	pilD	1019383..1020255 (+)	873	WP_171281660.1	A24 family peptidase	Machinery gene
E5E96_RS04850 (E5E96_04875)	coaE	1020275..1020889 (+)	615	WP_024945430.1	dephospho-CoA kinase	-
E5E96_RS04855 (E5E96_04880)	zapD	1020927..1021649 (+)	723	WP_024945431.1	cell division protein ZapD	-
E5E96_RS04860 (E5E96_04885)	yacG	1021659..1021853 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
E5E96_RS04865 (E5E96_04890)	mutT	1021914..1022327 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
E5E96_RS04870 (E5E96_04895)	-	1022336..1023520 (-)	1185	WP_171281661.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32443.72 Da
• Isoelectric Point: 6.8986

>NTDB_id=354952 E5E96_RS04845 WP_171281660.1 1019383..1020255(+) (pilD) [Aeromonas sp. 1805]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLHKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLHNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=354952 E5E96_RS04845 WP_171281660.1 1019383..1020255(+) (pilD) [Aeromonas sp. 1805]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAACAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGCACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCTTGCTGTTCAACCTGGCAGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTACTGCTGCTCTCGTCGCTG
GTGGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCACAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60	98.276	0.59
pilD	Vibrio campbellii strain DS40M4	55.245	98.621	0.545
pilD	Acinetobacter baumannii D1279779	53.169	97.931	0.521
pilD	Acinetobacter nosocomialis M2	53.169	97.931	0.521
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455