Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPY00_RS07280 Genome accession   NZ_CP046747
Coordinates   1553655..1555733 (-) Length   692 a.a.
NCBI ID   WP_001887325.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548655..1560733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS07265 ompR 1549583..1550443 (+) 861 WP_001292056.1 two-component system response regulator OmpR -
  GPY00_RS07270 envZ 1550512..1551828 (+) 1317 WP_001222686.1 two-component system sensor histidine kinase EnvZ -
  GPY00_RS07275 - 1551853..1553253 (-) 1401 WP_001887326.1 uracil-xanthine permease family protein -
  GPY00_RS07280 recG 1553655..1555733 (-) 2079 WP_001887325.1 ATP-dependent DNA helicase RecG Machinery gene
  GPY00_RS07285 spoT 1555851..1557968 (-) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPY00_RS07290 rpoZ 1558000..1558272 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  GPY00_RS07295 gmk 1558380..1559003 (-) 624 WP_000515793.1 guanylate kinase -
  GPY00_RS07300 - 1559371..1560042 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 77033.31 Da        Isoelectric Point: 7.7534

>NTDB_id=354776 GPY00_RS07280 WP_001887325.1 1553655..1555733(-) (recG) [Vibrio cholerae strain 3541-04]
MSQLLSAVPLCELSGVGAKIAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIRVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=354776 GPY00_RS07280 WP_001887325.1 1553655..1555733(-) (recG) [Vibrio cholerae strain 3541-04]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAATCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTACGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACGCTGACGCTACGCTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAGTTTGTGCATGCCTACGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATTTGACTGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTCAAAATCATTCATCGCCCATCGGCGGATATCGATTTACGTCTGTTTGAAC
AAGGGCGACATCCGGCGCAAATTCGGCTGATCATGGAAGAACTGCTAGCACAGAATCTCTCGATGCTTGCGATTCGCAGC
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCTTTTAC
GCCGACTAAGGCGCAGCAGCGCGTGGTCGCCGAAATTGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTAGCC
TTGATGGCTCCTACCGAGCTACTAGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCGAGT
GGGGTGGCTCGCGGGTAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTTGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTTGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGCTTAGAGCTACGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGAAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCGGCTGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTTGCCACTACAGTGATTGAAGTGGGCGTGGATGTGCCTAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGGCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTGGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

DEAD/DEAH box helicase (DEAD)

(271-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

RecG wedge domain (RecG_wedge)

(15-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37