Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPW86_RS11790 Genome accession   NZ_CP046742
Coordinates   1299432..1301510 (+) Length   692 a.a.
NCBI ID   WP_114716691.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3523-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294432..1306510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS11770 - 1295122..1295793 (-) 672 WP_001015356.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  GPW86_RS11775 gmk 1296161..1296784 (+) 624 WP_000515793.1 guanylate kinase -
  GPW86_RS11780 rpoZ 1296892..1297164 (+) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  GPW86_RS11785 spoT 1297196..1299313 (+) 2118 WP_114808193.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPW86_RS11790 recG 1299432..1301510 (+) 2079 WP_114716691.1 ATP-dependent DNA helicase RecG Machinery gene
  GPW86_RS11795 - 1301855..1303255 (+) 1401 WP_042989352.1 uracil-xanthine permease family protein -
  GPW86_RS11800 envZ 1303280..1304596 (-) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  GPW86_RS11805 ompR 1304665..1305387 (-) 723 WP_000230023.1 two-component system response regulator OmpR -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76947.17 Da        Isoelectric Point: 7.5643

>NTDB_id=354587 GPW86_RS11790 WP_114716691.1 1299432..1301510(+) (recG) [Vibrio cholerae strain 3523-03]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=354587 GPW86_RS11790 WP_114716691.1 1299432..1301510(+) (recG) [Vibrio cholerae strain 3523-03]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACGGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCCATAGTGC
AACTGCACCACGGTTTATGGGCTGCGGTACAAGGCAAAGTGATGGCGGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACGCTGACGCTACGCTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAGTTTGTGCATGCCTATGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATTTGACTGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTCAAAATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTGGCACAGAATCTCTCCATGCTCGCGATTCGCAGC
CAAGGCCAGCAAGACGTGGCCTTACCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCCTTTTC
TCCGACTAAGGCGCAGCAGCGCGTGGTCGCCGAAATTGAAGCGGATTTAGAAAAACCACATCCCATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTCGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACGCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
CGGCTGGCTCGCGGGTAAGCTTAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCGTTGTTCCAAGAGCAAGTATCGTTTGACCATCTAGCCTTGGTCATTATTGATGAGCAACATCGC
TTCGGGGTACATCAGCGCTTAGAGCTACGCGAGAAAGGGGCGAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCGGTGATTGATGAGTTGCCACCCGGAC
GCACTCCCATCCAAACTGTGGCAATTCCTGATACCAAACGCGATGAGATTGTTGAGCGTATTCGCCACGCTTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCACAAGCGGCCGCAGAAACGGC
AGAAGAACTGCAACGTAAACTTCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAATAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTACCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGCCGAGTCGGGCGTGG
CACAGTTGCCAGCCACTGTGTGCTTCTATTTCATGCGCCATTGTCAAAAACCGCTCAAAAACGCTTAGGCGTTCTGCGTG
AAAGCAATGATGGCTTCGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTACTGGGTACCAAACAAACC
GGCTTGGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCTAAAGCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

DEAD/DEAH box helicase (DEAD)

(271-432)

RecG wedge domain (RecG_wedge)

(15-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.478

94.075

0.371