Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | EBI04_RS07250 | Genome accession | NZ_CP038452 |
| Coordinates | 1412110..1412733 (+) | Length | 207 a.a. |
| NCBI ID | WP_135256900.1 | Uniprot ID | - |
| Organism | Thermus caldilimi strain YIM 78456 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1407110..1417733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBI04_RS07230 | - | 1407760..1409181 (+) | 1422 | WP_135256898.1 | HD-GYP domain-containing protein | - |
| EBI04_RS07235 | - | 1409211..1409720 (+) | 510 | WP_240695260.1 | DUF5317 domain-containing protein | - |
| EBI04_RS07240 | - | 1409793..1410797 (+) | 1005 | WP_135256899.1 | homoisocitrate dehydrogenase | - |
| EBI04_RS07245 | pilM | 1410985..1412117 (+) | 1133 | Protein_1446 | type IV pilus assembly protein PilM | - |
| EBI04_RS07250 | pilN | 1412110..1412733 (+) | 624 | WP_135256900.1 | flagellar protein FliT | Machinery gene |
| EBI04_RS07255 | pilO | 1412723..1413346 (+) | 624 | WP_135256901.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| EBI04_RS07260 | - | 1413343..1414311 (+) | 969 | WP_135256902.1 | competence protein | - |
| EBI04_RS07265 | pilQ | 1414323..1416593 (+) | 2271 | WP_135256903.1 | secretin N-terminal domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23101.59 Da Isoelectric Point: 10.3940
>NTDB_id=354477 EBI04_RS07250 WP_135256900.1 1412110..1412733(+) (pilN) [Thermus caldilimi strain YIM 78456]
MIRLNLLPKNLRRRIEPGWWRLAAGAFALLTLSLLGFLHYTAYTELTLAKQERDALKAEVEALKPFIAEQNRLQQERKAL
EALLAIREGLKKNFVPWSEYLAAFIRQIPQQGGRLPVALRSVGTRAIPEDEANRMAQAGTYDGKKVQVEFTVQGEALNQN
ALVGFVRAFETSPRFGIEFQGASLDQNRGLYTFSARVGLVGGGESAR
MIRLNLLPKNLRRRIEPGWWRLAAGAFALLTLSLLGFLHYTAYTELTLAKQERDALKAEVEALKPFIAEQNRLQQERKAL
EALLAIREGLKKNFVPWSEYLAAFIRQIPQQGGRLPVALRSVGTRAIPEDEANRMAQAGTYDGKKVQVEFTVQGEALNQN
ALVGFVRAFETSPRFGIEFQGASLDQNRGLYTFSARVGLVGGGESAR
Nucleotide
Download Length: 624 bp
>NTDB_id=354477 EBI04_RS07250 WP_135256900.1 1412110..1412733(+) (pilN) [Thermus caldilimi strain YIM 78456]
TTGATTAGGCTTAACCTTCTCCCCAAAAACCTGCGCCGCCGTATTGAACCGGGTTGGTGGCGTCTGGCAGCGGGGGCCTT
TGCCCTGCTGACCCTTTCCCTTTTGGGCTTTCTCCACTACACCGCCTACACCGAACTTACCCTGGCCAAGCAGGAAAGGG
ATGCCCTGAAAGCGGAGGTGGAGGCCTTAAAACCCTTCATCGCCGAACAAAACCGCCTCCAGCAGGAGAGGAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTTAAGAAGAACTTTGTCCCCTGGTCCGAGTACCTGGCGGCCTTTATCCGGCA
AATCCCTCAGCAAGGCGGACGCCTCCCCGTGGCCCTGCGCTCCGTGGGTACCCGGGCCATTCCCGAGGACGAGGCCAACC
GGATGGCTCAAGCCGGGACCTATGACGGCAAAAAGGTCCAGGTGGAGTTCACCGTGCAGGGGGAAGCCCTGAACCAAAAC
GCCCTGGTGGGCTTCGTGCGGGCTTTTGAAACCTCGCCCCGATTCGGCATAGAGTTCCAGGGGGCTTCCCTGGACCAGAA
CCGGGGGCTTTACACCTTTAGCGCCCGGGTGGGCCTGGTGGGAGGTGGGGAAAGTGCTCGCTAG
TTGATTAGGCTTAACCTTCTCCCCAAAAACCTGCGCCGCCGTATTGAACCGGGTTGGTGGCGTCTGGCAGCGGGGGCCTT
TGCCCTGCTGACCCTTTCCCTTTTGGGCTTTCTCCACTACACCGCCTACACCGAACTTACCCTGGCCAAGCAGGAAAGGG
ATGCCCTGAAAGCGGAGGTGGAGGCCTTAAAACCCTTCATCGCCGAACAAAACCGCCTCCAGCAGGAGAGGAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTTAAGAAGAACTTTGTCCCCTGGTCCGAGTACCTGGCGGCCTTTATCCGGCA
AATCCCTCAGCAAGGCGGACGCCTCCCCGTGGCCCTGCGCTCCGTGGGTACCCGGGCCATTCCCGAGGACGAGGCCAACC
GGATGGCTCAAGCCGGGACCTATGACGGCAAAAAGGTCCAGGTGGAGTTCACCGTGCAGGGGGAAGCCCTGAACCAAAAC
GCCCTGGTGGGCTTCGTGCGGGCTTTTGAAACCTCGCCCCGATTCGGCATAGAGTTCCAGGGGGCTTCCCTGGACCAGAA
CCGGGGGCTTTACACCTTTAGCGCCCGGGTGGGCCTGGTGGGAGGTGGGGAAAGTGCTCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
75.845 |
100 |
0.758 |