Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E4R25_RS01225 | Genome accession | NZ_CP038451 |
| Coordinates | 242147..242704 (+) | Length | 185 a.a. |
| NCBI ID | WP_002822676.1 | Uniprot ID | A0AAJ2P509 |
| Organism | Oenococcus oeni strain SD-2a | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 237147..247704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4R25_RS01205 | - | 238837..239004 (+) | 168 | WP_155716938.1 | hypothetical protein | - |
| E4R25_RS01210 (E4R25_01215) | nadE | 239055..239882 (-) | 828 | WP_002817807.1 | ammonia-dependent NAD(+) synthetase | - |
| E4R25_RS01215 (E4R25_01220) | - | 240113..241579 (+) | 1467 | WP_002817808.1 | multicopper oxidase domain-containing protein | - |
| E4R25_RS01220 (E4R25_01225) | rpsF | 241698..242138 (+) | 441 | WP_002817809.1 | 30S ribosomal protein S6 | - |
| E4R25_RS01225 (E4R25_01230) | ssb | 242147..242704 (+) | 558 | WP_002822676.1 | single-stranded DNA-binding protein | Machinery gene |
| E4R25_RS01230 (E4R25_01235) | rpsR | 242727..243047 (+) | 321 | WP_002817487.1 | 30S ribosomal protein S18 | - |
| E4R25_RS01235 (E4R25_01240) | - | 243150..245207 (+) | 2058 | WP_002817488.1 | DHH family phosphoesterase | - |
| E4R25_RS01240 (E4R25_01245) | rplI | 245221..245676 (+) | 456 | WP_002817489.1 | 50S ribosomal protein L9 | - |
| E4R25_RS01245 (E4R25_01250) | dnaB | 245682..247139 (+) | 1458 | WP_002817943.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20219.88 Da Isoelectric Point: 4.5093
>NTDB_id=354456 E4R25_RS01225 WP_002822676.1 242147..242704(+) (ssb) [Oenococcus oeni strain SD-2a]
MINRVVLVGRLTRDVELRYTGNGDAVGSFTIAVERNFTNRAGEREADFISCVIWRKPAENFANFTGKGAMVGVEGRIQTR
TYDNNQGQKVYVTEVVVDNFQLLETRAQSEARRSQNGSAGNMGNTAPQSQSNFNIPNQQSNPFDSQFNNNASSASTNSQT
SSSSSPFNTDAGNDSLDISDDDLPF
MINRVVLVGRLTRDVELRYTGNGDAVGSFTIAVERNFTNRAGEREADFISCVIWRKPAENFANFTGKGAMVGVEGRIQTR
TYDNNQGQKVYVTEVVVDNFQLLETRAQSEARRSQNGSAGNMGNTAPQSQSNFNIPNQQSNPFDSQFNNNASSASTNSQT
SSSSSPFNTDAGNDSLDISDDDLPF
Nucleotide
Download Length: 558 bp
>NTDB_id=354456 E4R25_RS01225 WP_002822676.1 242147..242704(+) (ssb) [Oenococcus oeni strain SD-2a]
ATGATCAATCGAGTTGTATTAGTTGGTAGATTAACCCGCGACGTTGAGTTGCGTTATACAGGAAACGGTGATGCAGTTGG
ATCATTTACAATCGCTGTCGAACGAAATTTCACGAATCGCGCTGGTGAGCGCGAGGCTGATTTTATCAGTTGCGTGATTT
GGCGTAAACCTGCCGAAAACTTTGCCAATTTTACAGGTAAAGGAGCAATGGTTGGCGTCGAAGGCCGAATTCAGACCAGA
ACTTACGATAATAATCAGGGACAGAAGGTTTATGTGACCGAGGTTGTTGTTGATAATTTCCAATTATTGGAGACACGTGC
TCAATCTGAAGCGCGTCGTTCGCAAAATGGCAGTGCTGGTAACATGGGGAATACCGCTCCGCAAAGTCAGAGTAATTTCA
ATATTCCTAATCAACAGTCAAATCCATTTGATTCGCAATTCAACAATAATGCGAGTTCCGCTTCAACTAATAGTCAAACG
AGTTCTTCCAGCAGTCCTTTTAATACAGACGCCGGGAATGATTCGCTTGATATCTCGGATGATGATCTTCCGTTTTAA
ATGATCAATCGAGTTGTATTAGTTGGTAGATTAACCCGCGACGTTGAGTTGCGTTATACAGGAAACGGTGATGCAGTTGG
ATCATTTACAATCGCTGTCGAACGAAATTTCACGAATCGCGCTGGTGAGCGCGAGGCTGATTTTATCAGTTGCGTGATTT
GGCGTAAACCTGCCGAAAACTTTGCCAATTTTACAGGTAAAGGAGCAATGGTTGGCGTCGAAGGCCGAATTCAGACCAGA
ACTTACGATAATAATCAGGGACAGAAGGTTTATGTGACCGAGGTTGTTGTTGATAATTTCCAATTATTGGAGACACGTGC
TCAATCTGAAGCGCGTCGTTCGCAAAATGGCAGTGCTGGTAACATGGGGAATACCGCTCCGCAAAGTCAGAGTAATTTCA
ATATTCCTAATCAACAGTCAAATCCATTTGATTCGCAATTCAACAATAATGCGAGTTCCGCTTCAACTAATAGTCAAACG
AGTTCTTCCAGCAGTCCTTTTAATACAGACGCCGGGAATGATTCGCTTGATATCTCGGATGATGATCTTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.452 |
100 |
0.568 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.568 |
100 |
0.476 |