Detailed information NTG0354376

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E4186_RS02270
• Genome accession: NZ_CP038444
• Coordinates: 465895..466767 (-)
• Length: 290 a.a.
• NCBI ID: WP_042649027.1
• Uniprot ID: -
• Organism: Aeromonas media strain T5-8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 460895..471767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4186_RS02245 (E4186_02270)	secA	460942..463662 (+)	2721	WP_042649031.1	preprotein translocase subunit SecA	-
E4186_RS02250 (E4186_02275)	mutT	463818..464222 (+)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
E4186_RS02255 (E4186_02280)	yacG	464298..464492 (-)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
E4186_RS02260 (E4186_02285)	zapD	464502..465224 (-)	723	WP_042649029.1	cell division protein ZapD	-
E4186_RS02265 (E4186_02290)	coaE	465262..465876 (-)	615	WP_042649028.1	dephospho-CoA kinase	-
E4186_RS02270 (E4186_02295)	pilD	465895..466767 (-)	873	WP_042649027.1	A24 family peptidase	Machinery gene
E4186_RS02275 (E4186_02300)	pilC	466848..468089 (-)	1242	WP_042649026.1	type II secretion system F family protein	Machinery gene
E4186_RS02280 (E4186_02305)	pilB	468219..469925 (-)	1707	WP_042649025.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
E4186_RS22440	-	470223..470390 (-)	168	Protein_435	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E4186_RS02290 (E4186_02320)	tnpA	470563..470988 (-)	426	WP_041205574.1	IS200/IS605-like element ISAeme8 family transposase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32052.32 Da
• Isoelectric Point: 7.0918

>NTDB_id=354376 E4186_RS02270 WP_042649027.1 465895..466767(-) (pilD) [Aeromonas media strain T5-8]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=354376 E4186_RS02270 WP_042649027.1 465895..466767(-) (pilD) [Aeromonas media strain T5-8]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTTAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGTTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACACTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATCGGGATCGGACTTATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCACTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.518	95.862	0.503
pilD	Acinetobacter baumannii D1279779	52.158	95.862	0.5
pilD	Neisseria gonorrhoeae MS11	49.049	90.69	0.445