Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   E4T63_RS23885 Genome accession   NZ_CP038438
Coordinates   5178037..5179383 (+) Length   448 a.a.
NCBI ID   WP_134787358.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain LBUM677     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5173037..5184383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS23860 (E4T63_23860) pgeF 5173246..5173968 (-) 723 WP_134787357.1 peptidoglycan editing factor PgeF -
  E4T63_RS23865 (E4T63_23865) rluD 5173965..5174927 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E4T63_RS23870 (E4T63_23870) - 5175079..5176101 (+) 1023 WP_027612809.1 outer membrane protein assembly factor BamD -
  E4T63_RS23875 (E4T63_23875) - 5176228..5176461 (+) 234 WP_045122641.1 PP0621 family protein -
  E4T63_RS23880 (E4T63_23880) pilS 5176451..5178040 (+) 1590 WP_135296951.1 ATP-binding protein Regulator
  E4T63_RS23885 (E4T63_23885) pilR 5178037..5179383 (+) 1347 WP_134787358.1 sigma-54 dependent transcriptional regulator Regulator
  E4T63_RS23890 (E4T63_23890) thiO 5179515..5180615 (-) 1101 WP_135296587.1 glycine oxidase ThiO -
  E4T63_RS23895 (E4T63_23895) - 5180675..5181076 (-) 402 WP_135296588.1 type IV pilin protein -
  E4T63_RS23900 (E4T63_23900) - 5181092..5184175 (-) 3084 WP_135296589.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49994.23 Da        Isoelectric Point: 6.4266

>NTDB_id=354293 E4T63_RS23885 WP_134787358.1 5178037..5179383(+) (pilR) [Pseudomonas fluorescens strain LBUM677]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGTGLDLVQHIQQRHPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGGVASSIDRRLLGDSQPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAQQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
THMLQRLASNSGQPAAQLHPQALEALKRYRFPGNVRELENVLERAHTLCENQVIEAADLRLSEGNCAVEDGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=354293 E4T63_RS23885 WP_134787358.1 5178037..5179383(+) (pilR) [Pseudomonas fluorescens strain LBUM677]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGTGCTCGCAACCTCGGCGAAGCCCAGGCACTGTTGCAGCGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACGGGGCTGGACCTGGTGCAGCACATCCAGCAACGTCATCCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCGATCAATGCGCTGAAGGCCGGCGCCTTCGACTTCCTCACCAA
GCCGGTTGATCTCACGCGCCTGCGCGAACTGGTCAGCACCGCACTGCGCATGCCAGCGGCGGGGGGCGTCGCATCGTCGA
TAGATCGGCGCCTGCTCGGCGACTCGCAGCCCATGCGCGACCTTCGCAAACAGATCGACAAACTGGCGCGCAGTCAGGCA
CCGGTCTACATCAGCGGCGAATCGGGCAGCGGCAAAGAGCTGGTCGCGCGGTTGATCCACGAACAAGGGCCGCGCGCGCA
ACAGCCGTTTGTACCCGTCAACTGCGGGGCGATCCCTTCAGAGCTGATGGAGAGCGAATTTTTTGGCCATCGCAAAGGCA
GCTTTACCGGCGCGGTGGACGACAAACCGGGGCTGTTTCAGGCCGCGCACGGCGGCACCCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGTCGATGCAAGTCAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAAGA
AACCGTGGTCGATGTGCGCATTCTGTGCGCCACACACAAAGACCTGGAAGCGGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ACCTGTATTACCGCTTGAATGTGATCGAACTGCGCGTGCCATCCCTGCGCGAACGGCGCGACGACATCGAAGTGCTGGCC
ACGCACATGCTCCAGCGTCTGGCCAGCAACAGTGGCCAGCCGGCAGCCCAATTGCACCCGCAAGCGCTTGAAGCACTGAA
GCGTTATCGTTTTCCCGGAAATGTGCGAGAACTGGAGAATGTCCTCGAACGCGCGCACACTCTGTGCGAAAACCAGGTGA
TCGAGGCTGCGGATTTGCGCTTGAGCGAAGGCAATTGCGCAGTCGAGGACGGCATTGCCGACCTGACGCAGATCGACAAC
CTTGAAGATTATCTGGAGAACGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGGTTGAGTTTGTCGTTTCGCTCGATGCGCTACAGGCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

48.584

100

0.498

Multiple sequence alignment