Detailed information NTG0354286

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: E4T63_RS20275
• Genome accession: NZ_CP038438
• Coordinates: 4407881..4410094 (-)
• Length: 737 a.a.
• NCBI ID: WP_135296341.1
• Uniprot ID: A0AAP9CJW0
• Organism: Pseudomonas fluorescens strain LBUM677
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4402881..4415094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4T63_RS20240 (E4T63_20240)	murB	4403251..4404270 (-)	1020	WP_135296338.1	UDP-N-acetylmuramate dehydrogenase	-
E4T63_RS20245 (E4T63_20245)	-	4404267..4404731 (-)	465	WP_123587531.1	low molecular weight protein-tyrosine-phosphatase	-
E4T63_RS20250 (E4T63_20250)	kdsB	4404731..4405495 (-)	765	WP_135296339.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
E4T63_RS20255 (E4T63_20255)	-	4405492..4405677 (-)	186	WP_003174668.1	Trm112 family protein	-
E4T63_RS20260 (E4T63_20260)	lpxK	4405699..4406709 (-)	1011	WP_135296340.1	tetraacyldisaccharide 4'-kinase	-
E4T63_RS20265 (E4T63_20265)	-	4406709..4407137 (-)	429	WP_027612340.1	biopolymer transporter ExbD	-
E4T63_RS20270 (E4T63_20270)	exbB	4407134..4407769 (-)	636	WP_003227083.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
E4T63_RS20275 (E4T63_20275)	comA	4407881..4410094 (-)	2214	WP_135296341.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
E4T63_RS20280 (E4T63_20280)	-	4410231..4410749 (+)	519	WP_098965042.1	DUF2062 domain-containing protein	-
E4T63_RS20285 (E4T63_20285)	-	4410891..4411670 (-)	780	WP_098965044.1	ABC transporter permease	-
E4T63_RS20290 (E4T63_20290)	-	4411667..4412599 (-)	933	WP_027612335.1	ABC transporter ATP-binding protein	-
E4T63_RS20295 (E4T63_20295)	-	4412733..4413356 (-)	624	WP_135296342.1	glutathione S-transferase	-
E4T63_RS20300 (E4T63_20300)	-	4413400..4414059 (-)	660	WP_134787086.1	transglutaminase family protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 81222.68 Da
• Isoelectric Point: 10.4998

>NTDB_id=354286 E4T63_RS20275 WP_135296341.1 4407881..4410094(-) (comA) [Pseudomonas fluorescens strain LBUM677]
MRTGMMALAVGLLVPVFLPVLPPVGLMMLLPLVGLMLLPFRSYPLAFLLFGFTWACVSAQWALNDRLPEALDGETRWVEG
RVVGLPQTSEGVVRFELADARSRHEKLPSLMRLAWYAGPPLNSGERWRLAVKLRRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEANWAWRDSIRQRLLAVDAQGRGGALAALVLGDGSGLSREDWQILQETGTVHLLVISGQHIGMLAAVIYLL
VAGLARYGWWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLMLLWRLRFRHLGAWWPLLLAFDALLLLDPL
ASLRPGLWLSFAAVGILIFTFGGRLGAWKWWQTWTRAQWLIALGLCPVLLALSLPISVSGPLANLLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSLIAGAWPAWISPSLPWWVLLLGSLGALLLLLPRGVPLRPLGWPLLLILL
APPRERVAEGQADVWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALHKLGVNRIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDPPGLPAILRAEACESGRQWQWDGVRFQLWQWSAANDSNQRSCVLQIEANGERLLLTGDIDIAAE
RVLLDSPLAVPTHWLQAPHHGSRSSSSMVLLRALKPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIQLRL
GSFQAPWLMRQQRRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=354286 E4T63_RS20275 WP_135296341.1 4407881..4410094(-) (comA) [Pseudomonas fluorescens strain LBUM677]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGTTCCGGTTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCGTTGGTGGGACTGATGTTGTTGCCGTTTCGCAGCTATCCCCTGGCGTTTCTGCTATTCGGTTTCACCT
GGGCGTGCGTCAGTGCGCAATGGGCGTTGAATGATCGCCTGCCGGAAGCGCTTGACGGCGAAACCCGTTGGGTCGAAGGG
CGGGTGGTCGGTTTGCCGCAAACCAGCGAGGGCGTGGTGCGGTTCGAGTTGGCCGATGCCCGCTCGCGACACGAAAAATT
GCCGTCGTTGATGCGTCTGGCGTGGTACGCCGGGCCGCCGCTCAACAGCGGTGAGCGCTGGCGGCTGGCGGTGAAGCTCA
GGCGCCCCGGTGGTTTGCTCAATCCCGACGCCTTCGATTACGAAGCCTGGCTGTTGGCGCAACGCATCGGCGCGACCGGC
ACGATCAAGGATGGTCAGCGCCTGGCCGAGGCAAACTGGGCATGGCGCGACAGCATTCGTCAGCGCTTGCTGGCAGTCGA
TGCCCAAGGCCGGGGCGGTGCATTGGCGGCACTGGTGCTCGGCGACGGCTCCGGGCTCAGCCGCGAGGATTGGCAGATCC
TGCAGGAAACCGGCACCGTGCATCTGCTGGTGATTTCCGGTCAACACATCGGGATGTTGGCGGCGGTCATCTATCTGTTG
GTCGCCGGGCTGGCGCGCTACGGCTGGTGGCCGCTGCGCTGGCCATGGCTGCCATGGGCCTGTGGGCTGGCGTTTGCCGC
GGCGCTCGGTTACGGCTTGCTCGCCGGGTTTGATGTGCCGGTGCAACGGGCCTGCGTGATGGTTGGGCTGATGTTGTTGT
GGCGCCTGCGCTTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTGCTGGCATTCGATGCGTTGCTGTTGCTCGACCCGTTA
GCCAGTTTGCGTCCGGGTTTGTGGCTGTCGTTCGCCGCGGTGGGGATTTTGATTTTCACCTTCGGCGGGCGACTCGGCGC
GTGGAAATGGTGGCAGACCTGGACCCGCGCGCAATGGCTGATTGCGCTGGGTCTGTGCCCGGTGTTGCTGGCGCTGAGCC
TGCCGATCAGCGTCAGCGGGCCATTGGCAAATCTGCTCGCGGTGCCATGGGTCAGTCTGCTGGTGCTGCCACCGGCACTG
CTCGGCACGCTGTTGTTGCCGGTGCCTTACGTCGGTGCAGGCTTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TCGCGGCTTGTCGCTGATCGCCGGGGCTTGGCCGGCGTGGATCTCGCCGTCGCTGCCGTGGTGGGTTTTGCTGCTCGGCA
GTCTCGGCGCCTTGCTGTTGCTGTTGCCGCGTGGGGTGCCGTTGCGACCGTTGGGCTGGCCGTTGCTGTTGATTCTGCTG
GCGCCGCCGCGCGAGCGAGTGGCCGAGGGCCAGGCCGATGTCTGGCAGCTCGATGTCGGTCAGGGCCTGGCGATCCTGAT
CCGCACGCGTCATCACGCGTTGCTCTACGACGCCGGTCCACGCTTCGGCGATTTCGATCTGGGCGAGCGGGTGGTGCTGC
CGGCGCTGCACAAACTGGGGGTCAACCGCATCGATCTGATGCTGCTCAGTCATGCCGATGCCGACCATGCCGGTGGTGCG
CTGGCAGTATCGCGGGGCTTGAAAGTGACGCGGGTGATCAGCGGCGATCCGCCGGGGCTGCCCGCCATCCTGCGGGCCGA
GGCCTGTGAAAGCGGGCGCCAATGGCAGTGGGACGGGGTCCGTTTTCAGCTGTGGCAATGGTCGGCCGCCAATGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGTCTGCTGCTGACCGGCGATATCGACATCGCCGCCGAA
CGGGTTCTGCTCGACAGTCCGCTGGCCGTGCCGACGCACTGGCTGCAGGCACCGCACCATGGCAGTCGCAGTTCCTCCTC
GATGGTGCTGCTTCGGGCATTGAAGCCGCATTCGGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGTCATCCGCACC
CGCTGGTGCTCGCGCGTTATCGCCAGCAAGGGCTGCGCATCTACGACAGCGCGCAGCACGGCGCCATCCAGCTGCGCCTG
GGCAGCTTTCAGGCGCCGTGGCTGATGCGTCAACAACGGCGTTTCTGGCGCTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-675)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.256	97.422	0.607
comA	Ralstonia pseudosolanacearum GMI1000	34.355	100	0.365