Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   E4T63_RS20270 Genome accession   NZ_CP038438
Coordinates   4407134..4407769 (-) Length   211 a.a.
NCBI ID   WP_003227083.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain LBUM677     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4402134..4412769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS20230 (E4T63_20230) - 4402385..4402855 (-) 471 WP_027612345.1 (2Fe-2S)-binding protein -
  E4T63_RS20240 (E4T63_20240) murB 4403251..4404270 (-) 1020 WP_135296338.1 UDP-N-acetylmuramate dehydrogenase -
  E4T63_RS20245 (E4T63_20245) - 4404267..4404731 (-) 465 WP_123587531.1 low molecular weight protein-tyrosine-phosphatase -
  E4T63_RS20250 (E4T63_20250) kdsB 4404731..4405495 (-) 765 WP_135296339.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E4T63_RS20255 (E4T63_20255) - 4405492..4405677 (-) 186 WP_003174668.1 Trm112 family protein -
  E4T63_RS20260 (E4T63_20260) lpxK 4405699..4406709 (-) 1011 WP_135296340.1 tetraacyldisaccharide 4'-kinase -
  E4T63_RS20265 (E4T63_20265) - 4406709..4407137 (-) 429 WP_027612340.1 biopolymer transporter ExbD -
  E4T63_RS20270 (E4T63_20270) exbB 4407134..4407769 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E4T63_RS20275 (E4T63_20275) comA 4407881..4410094 (-) 2214 WP_135296341.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E4T63_RS20280 (E4T63_20280) - 4410231..4410749 (+) 519 WP_098965042.1 DUF2062 domain-containing protein -
  E4T63_RS20285 (E4T63_20285) - 4410891..4411670 (-) 780 WP_098965044.1 ABC transporter permease -
  E4T63_RS20290 (E4T63_20290) - 4411667..4412599 (-) 933 WP_027612335.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.00 Da        Isoelectric Point: 6.8768

>NTDB_id=354285 E4T63_RS20270 WP_003227083.1 4407134..4407769(-) (exbB) [Pseudomonas fluorescens strain LBUM677]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=354285 E4T63_RS20270 WP_003227083.1 4407134..4407769(-) (exbB) [Pseudomonas fluorescens strain LBUM677]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGTCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGTTGCTGGGCCTGTTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTCCTGGCCGGCGGTATTTCCAAGGCACTGATCACCACTGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment