Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GPA00_RS01545 Genome accession   NZ_CP046629
Coordinates   302006..304021 (-) Length   671 a.a.
NCBI ID   WP_157327259.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 297006..309021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS01515 (GPA00_01515) - 298304..299266 (+) 963 WP_024343594.1 asparaginase -
  GPA00_RS01520 (GPA00_01520) - 299332..299835 (-) 504 WP_157327256.1 DUF2975 domain-containing protein -
  GPA00_RS01525 (GPA00_01525) - 300038..300247 (-) 210 WP_021143062.1 helix-turn-helix domain-containing protein -
  GPA00_RS01530 (GPA00_01530) - 300259..300474 (-) 216 WP_024343592.1 hypothetical protein -
  GPA00_RS01535 (GPA00_01535) - 300491..300994 (-) 504 WP_232524221.1 DUF2975 domain-containing protein -
  GPA00_RS01540 (GPA00_01540) - 301048..301515 (-) 468 WP_157327258.1 hypothetical protein -
  GPA00_RS01545 (GPA00_01545) recG/mmsA 302006..304021 (-) 2016 WP_157327259.1 ATP-dependent DNA helicase RecG Machinery gene
  GPA00_RS01550 (GPA00_01550) alr 304111..305217 (-) 1107 WP_107374629.1 alanine racemase -
  GPA00_RS01555 (GPA00_01555) acpS 305291..305644 (-) 354 WP_021143069.1 holo-ACP synthase -
  GPA00_RS01560 (GPA00_01560) - 305763..306818 (-) 1056 WP_027968386.1 3-deoxy-7-phosphoheptulonate synthase -
  GPA00_RS01565 (GPA00_01565) - 306821..307852 (-) 1032 WP_021143072.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74655.94 Da        Isoelectric Point: 6.7426

>NTDB_id=354048 GPA00_RS01545 WP_157327259.1 302006..304021(-) (recG/mmsA) [Streptococcus equinus strain CNU G6]
MNLQSSIVELKGIGPKSAEKFHKLDIYTIEDLLLYYPFRYEDFKSKSVLDLVDGEKAVITGTVVTPANVQYYGYKRNRLS
FKIRQGEAVIAVSFFNQPYLSDKVELGSDVAIFGKWDALKSAVTGMKILAQVEDDMQPVYRVAQGISQAALVKAIKSAFE
IGAQNWLPENLPQVLLEKYRLLSRAKATTAMHFPKDLAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAITFDEK
KVAEKIAALPFALTGGQKRSLSDILSDMRSGGHMNRLLQGDVGSGKTVVASLAMYAAYTAGFQSALMVPTEILAEQHFES
LTQLFPDLSIAILTSGMKAAAKKAALTAIADGSVDMIVGTHALIQDAVSYHRLGLVITDEQHRFGVNQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLEVVLDWVKKELQKGAQAYVISPLIEESESLDLKN
AIALHEELSAYFDGTAEVALMHGRMKNDEKEAIMQDFKAQKSQILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGQKQSYAILVANPKTQTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
VASQIVSEKDWKSNPQWQVISQNLKDKGNFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=354048 GPA00_RS01545 WP_157327259.1 302006..304021(-) (recG/mmsA) [Streptococcus equinus strain CNU G6]
ATGAATTTACAATCATCAATTGTGGAATTAAAAGGAATAGGACCGAAGTCAGCAGAGAAGTTTCATAAGCTAGATATTTA
TACGATTGAAGATTTGCTGCTTTACTATCCTTTTCGATATGAAGATTTTAAGAGTAAAAGTGTTTTAGATTTAGTTGATG
GTGAAAAGGCTGTTATCACTGGTACAGTCGTCACACCGGCTAATGTACAATATTATGGTTATAAGCGTAACCGTCTGTCC
TTTAAAATTCGACAAGGCGAGGCTGTTATTGCGGTATCATTTTTCAACCAACCTTATCTTTCTGACAAGGTAGAGCTTGG
CAGTGATGTGGCGATTTTTGGAAAATGGGATGCCCTAAAATCTGCAGTGACAGGAATGAAGATTTTAGCGCAGGTGGAAG
ACGATATGCAGCCTGTTTACCGAGTAGCACAAGGCATCTCACAGGCAGCACTAGTTAAGGCTATTAAGTCAGCTTTTGAA
ATTGGTGCTCAAAACTGGTTGCCTGAGAATTTACCGCAGGTGCTTTTGGAGAAATACCGTTTGCTGAGTCGAGCGAAAGC
AACAACTGCCATGCATTTTCCAAAAGATTTAGCTGAATACAAGCAAGCTCTTCGACGAATCAAGTTTGAAGAACTCTTTT
ATTTCCAAATGAATCTGCAAGCCTTGAAGGCTGATAATAAATCAGAAGCAAATGGCCTTGCGATTACTTTTGACGAGAAG
AAAGTGGCTGAAAAGATTGCAGCTCTGCCATTTGCTCTAACGGGTGGTCAGAAACGAAGTCTAAGTGACATTTTGTCTGA
TATGCGCTCTGGCGGGCACATGAATCGTCTTTTGCAAGGGGATGTTGGTTCAGGTAAAACTGTTGTTGCTAGTCTTGCCA
TGTATGCTGCGTATACGGCTGGCTTTCAGTCTGCTTTGATGGTGCCAACAGAAATTCTAGCAGAGCAGCATTTTGAGAGT
CTGACGCAGCTCTTTCCTGATTTATCCATTGCTATTTTGACATCGGGAATGAAAGCAGCGGCTAAGAAAGCAGCTCTTAC
GGCGATTGCTGATGGTTCTGTGGACATGATTGTAGGAACGCATGCGCTTATTCAAGATGCGGTGAGCTACCATCGTCTGG
GACTTGTCATTACGGATGAGCAGCATCGCTTTGGGGTCAATCAGCGTCGTATTTTCCGTGAAAAAGGGGAAAATCCTGAT
GTGCTCATGATGACTGCGACACCTATCCCTCGTACGCTCGCCATTACTGCCTTTGGTGAGATGGATGTTTCAATCATTGA
CGAATTGCCAGCAGGTCGAAAACCAATTATTACACGTTGGGTGAAGCATGAGCAATTGGAGGTTGTACTTGATTGGGTGA
AAAAAGAGCTCCAAAAAGGTGCTCAGGCTTATGTGATTTCACCCTTGATTGAAGAATCAGAATCACTTGACTTAAAAAAC
GCTATCGCTTTGCATGAAGAACTTTCTGCTTATTTTGATGGAACAGCAGAAGTTGCTTTGATGCATGGTCGCATGAAAAA
TGACGAAAAAGAAGCTATCATGCAAGATTTTAAGGCGCAAAAAAGTCAGATTCTGGTATCAACGACAGTTATTGAAGTTG
GTGTCAATGTGCCAAATGCAACTATCATGATTATCATGGATGCTGATCGTTTTGGGCTTAGTCAGCTACATCAGCTGCGC
GGGCGTGTCGGACGTGGCCAAAAACAATCGTATGCTATTTTAGTCGCAAATCCTAAGACTCAGACAGGTAAGGAACGCAT
GAAAATCATGACAGAAACCACAGATGGTTTTGTTTTGGCAGAAGCTGACCTTAAAATGCGTGGTTCAGGTGAAATTTTCG
GAACACGCCAATCAGGAATTCCAGAATTCCAAGTGGCTGATATCGTTGAAGATTATAATATTCTTGAAGAGGCAAGGCGC
GTTGCAAGTCAGATTGTTTCAGAAAAAGATTGGAAAAGCAATCCACAGTGGCAAGTCATTAGCCAAAATCTCAAAGATAA
AGGAAATTTCGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(257-411)

RecG wedge domain (RecG_wedge)

(10-157)

Helicase conserved C-terminal domain (Helicase_C)

(451-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.535

100

0.715
  recG/mmsA Streptococcus pneumoniae R36A

71.535

100

0.715
  recG Bacillus subtilis subsp. subtilis str. 168

50.52

100

0.507
  recG Neisseria meningitidis strain C311

39.398

99.106

0.39