Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GO596_RS04485 Genome accession   NZ_CP046628
Coordinates   900684..902699 (+) Length   671 a.a.
NCBI ID   WP_157339280.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 895684..907699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS04465 (GO596_04465) - 896852..897883 (+) 1032 WP_024343587.1 3-deoxy-7-phosphoheptulonate synthase -
  GO596_RS04470 (GO596_04470) - 897886..898941 (+) 1056 WP_027968386.1 3-deoxy-7-phosphoheptulonate synthase -
  GO596_RS04475 (GO596_04475) acpS 899060..899413 (+) 354 WP_021143069.1 holo-ACP synthase -
  GO596_RS04480 (GO596_04480) alr 899487..900593 (+) 1107 WP_021143068.1 alanine racemase -
  GO596_RS04485 (GO596_04485) recG/mmsA 900684..902699 (+) 2016 WP_157339280.1 ATP-dependent DNA helicase RecG Machinery gene
  GO596_RS04490 (GO596_04490) - 903190..903657 (+) 468 WP_033153264.1 hypothetical protein -
  GO596_RS04495 (GO596_04495) - 903714..904181 (+) 468 WP_157339281.1 hypothetical protein -
  GO596_RS04500 (GO596_04500) - 904208..904711 (+) 504 WP_027968391.1 DUF2975 domain-containing protein -
  GO596_RS04505 (GO596_04505) - 904722..904931 (+) 210 WP_021143062.1 helix-turn-helix domain-containing protein -
  GO596_RS04510 (GO596_04510) - 904979..905941 (-) 963 WP_024343594.1 asparaginase -
  GO596_RS04515 (GO596_04515) - 906012..907415 (+) 1404 WP_027968392.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74609.92 Da        Isoelectric Point: 6.7425

>NTDB_id=353994 GO596_RS04485 WP_157339280.1 900684..902699(+) (recG/mmsA) [Streptococcus equinus strain CNU 77-23]
MNLQSSIVELKGIGPKSAEKFHKLDIYTIEDLLLYYPFRYEDFKSKSILDLVDGEKAVITGTVVTPANVQYYGYKRNRLS
FKIRQGEAVIAVSFFNQPYLSDKVELGSDVAIFGKWDALKSAVTGMKILAQVEDDMQPVYRVAQGISQAALVKAIKSAFE
IGAQNWLPENLPQVLLEKYRLLSRAKATAAMHFPKDLAEYKQALRRIKFEELFYFQMNLQALKADNKSEANGLAIAFDEK
KVAEKIAALPFALTGGQKRSLSDILSDMRSGGHMNRLLQGDVGSGKTVVASLAMYAAYTAGFQSALMVPTEILAEQHFES
LTQLFPDLSIAILTSGMKAAVKKAALTAIADGSVDMIVGTHALIQDAVSYHRLGLVITDEQHRFGVNQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITRWVKHEQLDVVLDWVKKELQKGAQAYVISPLIEESESLDLKN
AIALHEELSAYFDGTAEVALMHGRMKNDEKEAIMQDFKAQKSQVLVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGQKQSYAILVANPKTQTGKERMKIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEARR
VASQIVSEKDWKSNPQWQVISQNLKDKGNFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=353994 GO596_RS04485 WP_157339280.1 900684..902699(+) (recG/mmsA) [Streptococcus equinus strain CNU 77-23]
ATGAATTTACAATCATCAATTGTGGAATTAAAAGGAATAGGACCGAAGTCAGCAGAGAAGTTTCATAAGCTAGATATTTA
TACGATTGAAGATTTGCTGCTTTACTATCCTTTTCGATATGAAGATTTTAAGAGTAAAAGTATTTTAGATTTAGTTGATG
GTGAAAAGGCTGTTATCACTGGTACAGTCGTCACACCAGCTAATGTACAATATTATGGTTATAAGCGTAACCGTCTGTCC
TTTAAAATTCGACAAGGCGAGGCTGTTATTGCGGTATCATTTTTCAACCAACCTTATCTTTCTGACAAGGTAGAGCTTGG
CAGTGATGTGGCGATTTTTGGAAAATGGGATGCCCTAAAATCTGCAGTGACAGGAATGAAGATTTTAGCGCAGGTGGAAG
ACGATATGCAGCCTGTTTACCGAGTAGCACAAGGCATCTCACAGGCAGCGCTAGTTAAGGCTATTAAGTCAGCTTTTGAA
ATTGGTGCTCAAAACTGGTTGCCTGAGAATTTACCGCAGGTGCTTTTGGAGAAATACCGTTTGCTGAGTCGAGCGAAAGC
AACAGCTGCCATGCATTTTCCAAAAGATTTAGCTGAATACAAGCAAGCTCTTCGACGTATCAAGTTTGAAGAACTCTTTT
ATTTCCAAATGAATCTGCAAGCCTTGAAGGCTGATAACAAATCTGAAGCAAATGGTCTTGCGATTGCTTTTGACGAGAAG
AAAGTGGCTGAAAAGATTGCAGCTCTGCCATTTGCTCTAACGGGTGGTCAGAAACGAAGTCTAAGTGACATTTTGTCTGA
TATGCGCTCTGGCGGGCACATGAATCGTCTTTTGCAAGGGGATGTTGGTTCGGGTAAAACTGTTGTTGCTAGTCTTGCCA
TGTATGCTGCGTATACGGCTGGCTTTCAGTCTGCTTTGATGGTGCCAACAGAAATTCTAGCAGAGCAGCATTTTGAGAGT
CTGACGCAGCTCTTTCCTGATTTATCCATTGCCATTTTGACATCGGGAATGAAAGCAGCGGTTAAAAAGGCAGCTCTTAC
AGCGATTGCTGACGGTTCTGTGGACATGATTGTAGGAACGCATGCGCTTATTCAAGATGCGGTGAGCTACCATCGTCTGG
GACTTGTCATTACGGATGAGCAGCATCGCTTTGGAGTTAATCAGCGTCGTATTTTCCGTGAAAAAGGGGAAAATCCTGAT
GTGCTCATGATGACTGCGACACCTATCCCTCGTACGCTCGCCATTACTGCCTTTGGTGAGATGGATGTTTCAATCATTGA
CGAATTGCCAGCAGGTCGAAAACCAATTATTACACGTTGGGTGAAGCATGAGCAATTGGATGTTGTACTTGATTGGGTGA
AAAAAGAGCTTCAAAAAGGTGCTCAGGCTTATGTGATTTCACCCTTGATTGAAGAATCAGAATCGCTTGACTTGAAGAAT
GCTATTGCTTTGCATGAAGAACTTTCTGCTTATTTTGATGGAACAGCAGAAGTTGCTTTGATGCATGGTCGCATGAAAAA
TGATGAGAAAGAAGCCATCATGCAAGATTTTAAGGCGCAAAAAAGTCAGGTTCTGGTATCAACGACAGTTATTGAAGTTG
GTGTCAATGTGCCAAATGCAACTATCATGATTATCATGGATGCTGATCGTTTTGGGCTTAGTCAGCTACATCAGCTGCGC
GGGCGTGTCGGACGTGGGCAAAAACAATCGTATGCTATTTTAGTCGCAAATCCTAAGACTCAGACAGGTAAGGAACGCAT
GAAAATCATGACAGAAACCACAGATGGTTTTGTCTTGGCAGAAGCTGACCTTAAAATGCGTGGTTCAGGTGAAATCTTCG
GAACACGCCAATCAGGGATTCCAGAATTCCAAGTGGCTGATATCGTTGAAGATTATAATATTCTTGAAGAGGCAAGGCGC
GTTGCAAGTCAGATTGTTTCAGAAAAAGATTGGAAAAGCAATCCACAGTGGCAAGTCATTAGCCAAAATCTCAAAGATAA
AGGAAATTTCGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(10-157)

DEAD/DEAH box helicase (DEAD)

(257-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

Helicase conserved C-terminal domain (Helicase_C)

(453-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.237

100

0.712
  recG/mmsA Streptococcus pneumoniae R36A

71.237

100

0.712
  recG Bacillus subtilis subsp. subtilis str. 168

50.52

100

0.507
  recG Neisseria meningitidis strain C311

39.549

99.106

0.392

Multiple sequence alignment