Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   GOM46_RS01145 Genome accession   NZ_CP046525
Coordinates   225582..226019 (+) Length   145 a.a.
NCBI ID   WP_235083715.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 220582..231019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01110 (GOM46_01095) - 221860..222237 (+) 378 WP_006150119.1 DUF1033 family protein -
  GOM46_RS01115 (GOM46_01100) comGA/cglA/cilD 222289..223227 (+) 939 WP_235083711.1 competence type IV pilus ATPase ComGA Machinery gene
  GOM46_RS01120 (GOM46_01105) comGB/cglB 223151..224194 (+) 1044 WP_235083712.1 competence type IV pilus assembly protein ComGB Machinery gene
  GOM46_RS01125 (GOM46_01110) comGC/cglC 224195..224518 (+) 324 WP_235083713.1 competence type IV pilus major pilin ComGC Machinery gene
  GOM46_RS01130 (GOM46_01115) comGD/cglD 224481..224915 (+) 435 WP_029689590.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOM46_RS01135 (GOM46_01120) comGE/cglE 224878..225180 (+) 303 WP_025169999.1 competence type IV pilus minor pilin ComGE Machinery gene
  GOM46_RS01140 (GOM46_01125) comGF/cglF 225143..225604 (+) 462 WP_235083714.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOM46_RS01145 (GOM46_01130) comGG/cglG 225582..226019 (+) 438 WP_235083715.1 competence type IV pilus minor pilin ComGG Machinery gene
  GOM46_RS01150 (GOM46_01135) - 226078..226779 (+) 702 WP_235083716.1 histidine phosphatase family protein -
  GOM46_RS01155 (GOM46_01140) - 226971..228677 (+) 1707 WP_235083717.1 ABC transporter ATP-binding protein -
  GOM46_RS01160 (GOM46_01145) rcrQ 228679..230445 (+) 1767 WP_235083718.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16583.85 Da        Isoelectric Point: 10.2202

>NTDB_id=352889 GOM46_RS01145 WP_235083715.1 225582..226019(+) (comGG/cglG) [Streptococcus infantis strain SO]
MWKKKKVRAGVLLYAVTIAGIFSLLLQFYLNRQVAHHQDYALNKEKLLAFAMAKRTYEKASSESGEQSFDIGKSTYHYDE
KSFITTVNTGKNQFEFRFSPLKKTGQKSEKTENKPKEGNEEKKEEGSKKETAKSYKLAPSKNGTE

Nucleotide


Download         Length: 438 bp        

>NTDB_id=352889 GOM46_RS01145 WP_235083715.1 225582..226019(+) (comGG/cglG) [Streptococcus infantis strain SO]
GTGTGGAAAAAGAAAAAAGTTAGGGCTGGAGTTCTCCTTTACGCCGTTACTATTGCTGGAATTTTTAGTCTCTTATTGCA
GTTTTATCTGAATCGACAAGTGGCTCATCATCAGGATTATGCCCTTAATAAAGAAAAGCTTCTTGCATTTGCAATGGCTA
AAAGAACTTATGAAAAAGCTAGTTCTGAAAGTGGAGAACAGTCATTTGACATAGGAAAGTCAACTTATCATTATGATGAG
AAGAGCTTCATAACAACTGTTAACACTGGAAAAAATCAATTTGAATTTCGTTTTTCACCTTTGAAAAAGACCGGCCAAAA
GTCTGAGAAAACAGAAAATAAGCCCAAAGAAGGAAATGAGGAGAAAAAAGAAGAAGGGAGCAAAAAAGAGACGGCTAAGT
CTTATAAACTAGCACCTTCAAAGAACGGAACAGAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

68.317

69.655

0.476
  comGG/cglG Streptococcus pneumoniae D39

68.317

69.655

0.476
  comGG/cglG Streptococcus pneumoniae R6

68.317

69.655

0.476
  comGG/cglG Streptococcus pneumoniae TIGR4

68.317

69.655

0.476
  comGG/cglG Streptococcus mitis NCTC 12261

69.388

67.586

0.469
  comGG/cglG Streptococcus mitis SK321

69.388

67.586

0.469

Multiple sequence alignment