Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GOM46_RS01160 Genome accession   NZ_CP046525
Coordinates   228679..230445 (+) Length   588 a.a.
NCBI ID   WP_235083718.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 223679..235445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01125 (GOM46_01110) comGC/cglC 224195..224518 (+) 324 WP_235083713.1 competence type IV pilus major pilin ComGC Machinery gene
  GOM46_RS01130 (GOM46_01115) comGD/cglD 224481..224915 (+) 435 WP_029689590.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOM46_RS01135 (GOM46_01120) comGE/cglE 224878..225180 (+) 303 WP_025169999.1 competence type IV pilus minor pilin ComGE Machinery gene
  GOM46_RS01140 (GOM46_01125) comGF/cglF 225143..225604 (+) 462 WP_235083714.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOM46_RS01145 (GOM46_01130) comGG/cglG 225582..226019 (+) 438 WP_235083715.1 competence type IV pilus minor pilin ComGG Machinery gene
  GOM46_RS01150 (GOM46_01135) - 226078..226779 (+) 702 WP_235083716.1 histidine phosphatase family protein -
  GOM46_RS01155 (GOM46_01140) - 226971..228677 (+) 1707 WP_235083717.1 ABC transporter ATP-binding protein -
  GOM46_RS01160 (GOM46_01145) rcrQ 228679..230445 (+) 1767 WP_235083718.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS01165 (GOM46_01150) - 230583..231272 (+) 690 WP_070889112.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  GOM46_RS01170 (GOM46_01155) - 231444..232793 (+) 1350 WP_000018239.1 glucose-6-phosphate isomerase -
  GOM46_RS01175 (GOM46_01160) - 232977..233777 (+) 801 WP_001000837.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65472.79 Da        Isoelectric Point: 4.9633

>NTDB_id=352890 GOM46_RS01160 WP_235083718.1 228679..230445(+) (rcrQ) [Streptococcus infantis strain SO]
MKTFRFFWNYFKVYKISFVVVITMIIIATVAQALFPVFAGQTVTELANLVIAYQNGNSDMVWQSLYGLLINLAYVLIALV
VSSLIYMVLMSRIIAESTNEMRKGLFGKLSRLTVSFFDRHQDGDILSRFTSDLDNILQAFNESLVSVMTNIALYIGLLIV
MFAKNVTLALITTASTPIAVVMLFFILKLARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDVIAGFVEQNERVRK
ATFKGRMFSGILFPVMNGMSLVNTAIVIFVGSAVLLNDKNIETATALGLIVMFTQFSQQYYQPIIQLAASWGSLQLAFTG
ADRIQEMFDAEEEIRPQDAPVFNELKEGVEIRNVDFSYLPGQPILKDVSISAPKGKMIAVVGPTGSGKTTIMNLINRFYD
VDAGSISFDGRDIREFDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEAAAKATHIHEYIESLPDKYDTLIN
DDQSVFSTGQKQLISIARTLMTDPQVLILDEATSNVDTVTESKIQNAMEAIVAGRTSFVIAHRLKTILNADQIIVLKDGE
VIEQGNHHELLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=352890 GOM46_RS01160 WP_235083718.1 228679..230445(+) (rcrQ) [Streptococcus infantis strain SO]
ATGAAGACATTTCGATTTTTTTGGAACTATTTTAAAGTTTACAAGATATCCTTTGTCGTTGTTATCACTATGATTATCAT
TGCAACGGTAGCACAAGCTCTCTTTCCAGTTTTTGCAGGTCAAACAGTAACGGAACTAGCTAATTTGGTTATAGCCTATC
AAAATGGAAATTCAGATATGGTTTGGCAAAGTCTATACGGACTCCTTATTAATCTTGCCTATGTTTTGATTGCGCTCGTG
GTGTCTAGTCTCATCTATATGGTCTTGATGAGCCGCATTATTGCTGAATCTACAAATGAGATGCGTAAGGGGCTTTTTGG
CAAGCTTTCTCGCCTGACAGTTTCCTTCTTTGACCGTCATCAAGATGGGGATATTCTGTCTCGTTTTACCAGTGATTTGG
ATAATATTCTCCAAGCTTTTAATGAAAGTCTTGTGTCTGTCATGACCAATATTGCCCTTTACATTGGTTTGCTGATTGTC
ATGTTTGCAAAAAATGTTACCTTGGCTTTGATTACGACTGCTAGCACTCCGATAGCAGTTGTCATGTTGTTCTTTATCTT
AAAGCTAGCGCGGAAATACACCAACCTCCAACAAAAAGAAGTTGGGAAGCTCAATGCTTATATGGATGAGAGTATCTCTG
GACAAAAAGCAGTTATCGTTCAAGGTATCCAAGAAGATGTGATTGCTGGTTTTGTCGAGCAAAATGAACGTGTTCGAAAA
GCAACCTTTAAGGGCAGAATGTTTTCAGGAATTCTCTTTCCTGTCATGAACGGAATGAGCTTGGTCAATACAGCTATTGT
TATTTTTGTCGGTTCAGCTGTCTTACTAAATGATAAGAACATCGAGACAGCAACTGCTCTGGGCTTGATTGTCATGTTTA
CTCAGTTCTCGCAACAGTATTACCAGCCCATTATCCAATTAGCAGCGAGCTGGGGAAGCTTGCAACTGGCCTTTACAGGT
GCGGACCGTATCCAAGAAATGTTTGATGCAGAAGAAGAAATTCGACCTCAAGATGCTCCAGTATTTAACGAATTAAAAGA
AGGTGTGGAGATTCGTAACGTGGACTTCTCCTACCTTCCAGGACAACCAATTTTGAAAGATGTTAGCATTTCAGCTCCAA
AAGGAAAAATGATTGCGGTAGTTGGTCCGACAGGTTCAGGGAAAACAACTATCATGAACCTCATAAATCGTTTTTATGAT
GTGGATGCAGGAAGTATCAGCTTTGATGGCAGAGATATTCGCGAGTTTGATTTAGACAGTTTGCGAAGTAAGGTGGGAAT
TGTCTTGCAGGATTCTGTTTTGTTCAGCGGAACTATTCGGGACAATATTCGATTCGGTGTACCAGATGCTAGTCAGGAGA
TGGTAGAAGCAGCTGCTAAGGCTACACATATCCATGAATATATCGAAAGTCTACCAGATAAGTACGATACTCTGATTAAT
GATGACCAGAGCGTCTTCTCAACCGGTCAGAAGCAGTTGATTTCCATCGCTCGAACCTTAATGACGGATCCCCAGGTCTT
AATCTTGGATGAGGCAACATCAAACGTGGATACTGTAACAGAGAGCAAGATTCAAAATGCTATGGAGGCAATTGTGGCAG
GAAGAACGAGCTTTGTGATTGCCCATCGCTTGAAAACTATTCTCAATGCCGATCAGATTATTGTCCTTAAGGATGGTGAG
GTTATCGAACAAGGAAATCATCACGAATTACTCAAGCTTGGAGGCTTTTACTCCGAACTGTACCATAATCAATTTGTCTT
TGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-514)

ABC transporter transmembrane region (ABC_membrane)

(20-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.661

98.81

0.362