Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GOM47_RS05085 Genome accession   NZ_CP046524
Coordinates   998768..1002043 (-) Length   1091 a.a.
NCBI ID   WP_235080023.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 993768..1007043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS05080 (GOM47_05085) rexA 995118..998771 (-) 3654 WP_235080022.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GOM47_RS05085 (GOM47_05090) rexB 998768..1002043 (-) 3276 WP_235080023.1 ATP-dependent nuclease subunit B Machinery gene
  GOM47_RS05090 (GOM47_05095) - 1002163..1002972 (+) 810 WP_235080024.1 Cof-type HAD-IIB family hydrolase -
  GOM47_RS05095 (GOM47_05100) - 1003117..1004025 (+) 909 WP_235080026.1 ATP-binding cassette domain-containing protein -
  GOM47_RS05100 (GOM47_05105) - 1004036..1004791 (+) 756 WP_235080027.1 ABC transporter permease -
  GOM47_RS05105 (GOM47_05110) - 1004830..1005708 (-) 879 WP_235080028.1 sensor histidine kinase -
  GOM47_RS05110 (GOM47_05115) - 1005708..1006406 (-) 699 WP_235080029.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124681.54 Da        Isoelectric Point: 6.3042

>NTDB_id=352813 GOM47_RS05085 WP_235080023.1 998768..1002043(-) (rexB) [Streptococcus oralis strain SOT]
MKLLYTDIRTSLTKILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLILNDLPTKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLVELYHEMTTAQMNFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQIALIIDGFTRFSAEEGHVVDLLHRKGAEIVIGAYASKKSYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQNRSQTHEKIDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
DHPDLSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPAFQQPFTKSHHGKFDLARLNAIRLRVLAPLETLFASRKQKTENLLQKWNTFLKSAALSK
QMQELTATMETLEQERQAEVWKAFCHVFEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENE
SKESAYLQELVSFGFSRIEKRMNHKNLSKEDMGSYHSLLSSLVAYHQQTASSENEQDVTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPA
ENSFDHRLEQAIKETSQEREFEAIYQESFEAQFTKEVLLDVARTTCHILRHNPAIETIQEEATFGGRDQPFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKRAGEQNFFGAMYLEMAEPVQSLLTVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILQGKFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLEDGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=352813 GOM47_RS05085 WP_235080023.1 998768..1002043(-) (rexB) [Streptococcus oralis strain SOT]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAAAAATCCTGACTAGAGAGGCGGAGGAGCTAGTTGCTGCTGG
CAAGCGGGTTTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTTGCTCAGATGGCTCGTTACTTAATCTTGAATGATTTGCCGACTAAAACAAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAATGTCTTGCAGAACTAGATCCCAAGGACTTGCGTGTTTATGGTGC
TATTAAACAAGATCCTCAGTTTATCCAGCAGTTGGTTGAACTTTATCATGAGATGACGACTGCTCAGATGAACTTTTTGG
ACTTGGAAAGTTTGACAGATGAGGATAAGCGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTATCCCATTTGATTGAGGCTATTGAGAATGATAAGGTAAGTAGTGATTTCAGTCA
GATTGCCTTGATTATTGACGGTTTTACCCGTTTTTCTGCTGAGGAAGGACATGTGGTGGATCTACTCCATCGCAAAGGTG
CCGAGATTGTTATTGGGGCCTATGCAAGCAAGAAGTCCTATACCAGTCCGTTCACTGAAGGGAATCTCTACCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGAATCGTTCTCAGACTCATGAGAAAATAGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTAGATGTCGATGAGAAGGACCGTG
AAAATTTGCAAATCTGGTCTTGTTTGACACAAAAAGAGGAGTTGGAACTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GACCATCCAGACCTGAGTTACAAGAATTTTCGTATTCTCTTGGGAGATGTAGCTTCTTATCAGTTATCACTGAAAACTAT
TTTTGACCAGTACCAGATTCCGTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCCTTAACCCAGTATGTGGAGT
CTATTTTACGTTTGAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACTGACCTT
AGCCAAGCTGATATTGATGCTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAGCCCTT
CACAAAATCCCACCACGGAAAATTTGATTTGGCACGTTTGAACGCCATTCGTCTGCGAGTTTTGGCTCCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAGTGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACTATGGAAACTCTAGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCTTTCTGCCATGT
TTTTGAACAATTTGCGACCGTTTTTGCCGGTTCACAAGTTAGTCTAGAAGACTTCCTGTCCTTGCTTCATTCTGGGATGA
GCCTTTCTCAGTACCGTACTATTCCAGCAACTGTGGACACCGTTCTGGTGCAGAGTTACGATCTGATTGCACCTCTGACC
GCTGACTTTGTCTACGCCATTGGGCTGACTCAGGATCATTTGCCAAAAATCGCGCAAAATACCAGCCTTTTAACAGATGA
AGAAAGACAAAGCCTAAACCAAGCGACAGAAGAGGGAGCGCAATTACTGATTGCAAGTAGCGAAAATCTCAAGAAAAATC
GCTATACCATGCTTTCCTTAGTTAATGCTGCCCGTAAACAGTTGGTGTTATCAGCACCCAGTCTTCTCAATGAAAACGAG
AGCAAGGAATCTGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGGATAGAAAAGAGGATGAACCATAAAAATCT
TAGCAAAGAAGATATGGGTTCTTATCACAGTCTCTTGTCTAGTCTCGTTGCCTATCATCAGCAAACTGCTTCTAGTGAAA
ATGAACAAGATGTGACCTTTGTCAAGGTCTTGGCGCGTGTGATGGGTAAAAAACTCGATCAAAAAGGTCTTACAAATCCA
GCACTCCCAACCAGTCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTATACCCTGCTGACAAAGAGTTTTA
CCTGTCTACATCTGGTTTGACAGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTGCGCCCAGATGCTCGCAGTCACGGGAATTTCTTGCATCGTATTTTTGAACGTGCCTTGAAACTACCTGCT
GAAAATTCCTTTGACCACCGTCTGGAACAAGCTATTAAGGAAACAAGTCAAGAACGGGAATTTGAAGCCATTTATCAAGA
AAGTTTTGAAGCCCAGTTTACCAAGGAAGTTCTTCTTGATGTCGCTAGGACCACTTGCCACATCCTACGTCATAATCCAG
CCATTGAGACCATTCAGGAAGAGGCAACATTTGGCGGCAGAGACCAACCCTTTATCCAGTTGGATAATGGTCGCAGTGTC
CATGTGCGAGGTAAGGTGGACCGAATTGACCGTTTGAAAGCTGATGGAGCGCTAGGAGTGGTAGACTATAAGTCAAGTTT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGACTTAATTCCCAACTGCCAACCTATCTTGCTGCACTTAAAAGAGCAG
GAGAGCAGAACTTTTTCGGCGCTATGTACTTGGAAATGGCAGAGCCTGTCCAATCTCTCTTGACCGTTAAGAGTTTGGCA
GGAGCAGTAGTGGAAGCCAGCAAGTCTATGAAATATCAAGGCCTCTTTTTAGAGAAAGAAAGTAGTCATTTAGGCGAATT
TTACAATAAAAACAAGGCCAATCAGCTGACAGACGAGGAATTCCAGCTCTTACTAGACTATAATGCCCATCTTTACAAGA
AGGCAGCTGAGAAGATTTTACAAGGTAAGTTCGCCATCAATCCATACACAGAGAATGGCAGAAGTATTGCCCCATACGTT
CAACAACATCAGGCTATTACTGGCTTTGAAGCTAATTACCACTTGGGACAAGCCCGTTTCCTAGAAAAGTTAGACCTAGA
GGATGGCAAGCGTCTGGTCGGAGAAAAGCTCAAGCAAGCTTGGTTTGAAAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.551

100

0.896

Multiple sequence alignment