Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GOM47_RS02610 Genome accession   NZ_CP046524
Coordinates   488901..490916 (+) Length   671 a.a.
NCBI ID   WP_235080971.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 483901..495916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS02590 (GOM47_02580) - 485319..486350 (+) 1032 WP_235080968.1 3-deoxy-7-phosphoheptulonate synthase -
  GOM47_RS02595 (GOM47_02585) - 486352..487383 (+) 1032 WP_235080969.1 3-deoxy-7-phosphoheptulonate synthase -
  GOM47_RS02600 (GOM47_02590) acpS 487428..487790 (+) 363 WP_235081269.1 holo-ACP synthase -
  GOM47_RS02605 (GOM47_02595) alr 487780..488883 (+) 1104 WP_235080970.1 alanine racemase -
  GOM47_RS02610 (GOM47_02600) recG/mmsA 488901..490916 (+) 2016 WP_235080971.1 ATP-dependent DNA helicase RecG Machinery gene
  GOM47_RS02615 (GOM47_02605) - 491234..492214 (+) 981 WP_235080972.1 acetylxylan esterase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75315.86 Da        Isoelectric Point: 6.0691

>NTDB_id=352791 GOM47_RS02610 WP_235080971.1 488901..490916(+) (recG/mmsA) [Streptococcus oralis strain SOT]
MNLHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVLDLEDGEKAVLSGQVVTPASVQYYGFKRNRLR
FSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGKWDRAKASLTGMKVLAQVEDDLQPVYRLAQGISQASLVKVIKTAFD
QGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKDLAEYKQALRRIKFEELFYFQMQLQSLKSENRVQGSGLVLNWSQE
KVSAVKESLPFALTRAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMYATVTAGYQAALMVPTEILAEQHFES
LQNLFPDLKLALLTGSLKAAEKREVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPLIEESEALDLKN
AIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQEFKEKKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK
VASYISSIEGWKEDLEWRMIALHLEKREHLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=352791 GOM47_RS02610 WP_235080971.1 488901..490916(+) (recG/mmsA) [Streptococcus oralis strain SOT]
ATGAATCTACACCAACCCTTGCATGTCTTGCCTGGTGTGGGACCAAAGTCAGCAGAGAAATACGCCAAACTAGGAATTGA
AAACTTGCAAGACCTCTTGCTCTACTTTCCTTTCCGTTACGAAGATTTCAAGACCAAGCAGGTCCTAGACCTGGAAGACG
GCGAAAAGGCTGTCCTGTCTGGTCAAGTCGTGACTCCTGCCAGTGTCCAGTATTATGGTTTTAAGCGCAATCGCCTGCGT
TTTAGTCTCAAGCAGGGAGAAGTTGTTTTTGCGGTGAACTTCTTTAACCAACCCTACCTAGCTGACAAGATTGAACTAGG
CGCAACTCTAGCCGTTTTTGGTAAGTGGGACCGTGCTAAGGCTAGTCTGACAGGGATGAAGGTCCTAGCTCAGGTAGAAG
ATGACCTCCAGCCGGTCTATCGTCTGGCTCAAGGAATCAGTCAGGCCAGTTTGGTCAAGGTTATCAAGACAGCCTTTGAT
CAGGGCCTGGATCTCTTGATAGAGGAAAATCTGCCCCAGTCTTTACTGGATAAATACAAACTCATGTCCCGTTGCCAGGC
TGTCCGCGCTATGCATTTTCCTAAGGATTTGGCAGAATACAAGCAGGCCCTTCGTCGGATCAAATTTGAGGAACTCTTTT
ATTTTCAAATGCAGTTGCAGTCACTCAAGTCTGAAAATAGAGTTCAGGGAAGCGGTCTGGTTCTGAATTGGTCTCAAGAA
AAAGTGTCGGCTGTTAAAGAAAGTCTGCCTTTCGCCCTGACCCGAGCTCAGGAAAAGAGTCTGCAGGAAATATTGACCGA
CATGAAGTCCGACCATCACATGAATCGTCTCCTACAAGGAGATGTAGGGAGCGGAAAGACAGTTGTTGCAGGTCTAGCTA
TGTATGCTACTGTTACGGCTGGCTACCAGGCTGCCCTCATGGTACCGACAGAAATCCTAGCAGAGCAACACTTTGAGAGT
TTACAGAACCTTTTTCCGGACTTAAAACTCGCTCTCTTGACAGGTTCCTTGAAAGCTGCAGAAAAAAGAGAAGTCTTGGA
GACCATTGCCAAGGGTGAGGCCGACTTTATTATCGGAACACACGCTCTGATACAAGATGGAGTAGATTATGCTCGTCTTG
GTTTGATTATCATCGATGAGCAGCACCGTTTTGGTGTGGGGCAAAGGCGTATTTTGCGGGAAAAAGGCGACAATCCAGAC
GTTCTCATGATGACGGCGACTCCCATTCCACGGACGCTGGCTATCACAGCCTTTGGCGATATGGATGTTTCCATTATCGA
CCAGATGCCAGCAGGGCGGAAGCCCATTGTGACTCGCTGGATTAAGCATGAGCAGCTGCCTCAGGTCTTGACTTGGTTAG
AGGGGGAAATCCAAAAAGGTTCCCAAGCCTACGTTATCTCTCCCCTGATCGAAGAATCTGAAGCTCTGGACTTGAAAAAT
GCCATTGCCTTATCGGAGGAGTTGACAGCTCATTTTGCTGGCAAGGCAGAGGTTGCTTTGCTACATGGTAAGATGAAGAG
TGATGAAAAAGACCAGATTATGCAGGAGTTCAAAGAGAAAAAAACGGATATTCTGGTTTCGACGACGGTTATCGAGGTTG
GGGTTAATGTTCCCAATGCGACTGTCATGATTATCATGGATGCCGATCGCTTCGGTCTCAGTCAGCTTCACCAGCTCAGA
GGTCGTGTTGGTCGGGGGGACAAGCAGTCCTATGCCGTTCTCGTTGCTAATCCCAAGACGGACTCTGGGAAGGATCGCAT
GCGCATCATGACAGAAACCACCAATGGATTTGTCCTTGCTGAAGAAGATTTGAAAATGCGCGGATCGGGTGAGATTTTTG
GAACCAGACAGTCAGGCCTACCAGAGTTCCAAGTGGCGGATATTATCGAAGATTTTCCGATTTTAGAAGAAGCTAGAAAG
GTTGCCAGCTACATTAGTTCAATAGAAGGTTGGAAAGAGGATCTAGAATGGCGCATGATTGCTCTTCATCTAGAAAAGAG
AGAACATCTGGATTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(11-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-652)

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

97.168

100

0.972
  recG/mmsA Streptococcus pneumoniae R36A

97.168

100

0.972
  recG Bacillus subtilis subsp. subtilis str. 168

50.227

98.51

0.495
  recG Neisseria meningitidis strain C311

39.051

97.317

0.38