Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GOM48_RS02830 Genome accession   NZ_CP046523
Coordinates   564603..566618 (+) Length   671 a.a.
NCBI ID   WP_235098236.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 559603..571618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS02810 (GOM48_02790) - 561021..562052 (+) 1032 WP_235098229.1 3-deoxy-7-phosphoheptulonate synthase -
  GOM48_RS02815 (GOM48_02795) - 562054..563085 (+) 1032 WP_235098232.1 3-deoxy-7-phosphoheptulonate synthase -
  GOM48_RS02820 (GOM48_02800) acpS 563130..563492 (+) 363 WP_235098726.1 holo-ACP synthase -
  GOM48_RS02825 (GOM48_02805) alr 563482..564585 (+) 1104 WP_235098234.1 alanine racemase -
  GOM48_RS02830 (GOM48_02810) recG/mmsA 564603..566618 (+) 2016 WP_235098236.1 ATP-dependent DNA helicase RecG Machinery gene
  GOM48_RS02835 (GOM48_02815) - 567042..568025 (+) 984 WP_235098238.1 acetylxylan esterase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75328.92 Da        Isoelectric Point: 6.1866

>NTDB_id=352690 GOM48_RS02830 WP_235098236.1 564603..566618(+) (recG/mmsA) [Streptococcus oralis strain SOD]
MNLHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVMELEDGEKAVLSGQVVTPASVQYYGFKRNRLR
FSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGKWDRAKASLTGMKVLAQVEDDLQPVYRLAQGISQASLVKVIKTAFD
QGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKDLAEYKQTLRRIKFEELFYFQMQLQTLKSENRVQGSGLVLNWSKE
KVTAAKENLPFSLTPAQEKSLREILADMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFES
LKSLFPDLKLALLTGSLKATEKREVLETIAKGEADFIIGTHALIQDGVDYARLGLIIIDEQHRFGVGQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPLIEESEALDLKN
AIALSEELTAHFAGKAEVALLHGKMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTDSGKDRMRIMTETTNGFILAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK
VASYISSIEGWQEDPEWRMIALHLEKREHLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=352690 GOM48_RS02830 WP_235098236.1 564603..566618(+) (recG/mmsA) [Streptococcus oralis strain SOD]
ATGAACCTACATCAACCCTTGCATGTCTTGCCTGGTGTGGGACCAAAGTCAGCAGAGAAGTACGCCAAACTAGGAATTGA
AAACTTGCAAGACCTCTTGCTCTACTTTCCTTTCCGTTATGAAGATTTCAAAACTAAGCAAGTGATGGAGCTGGAGGACG
GTGAAAAGGCTGTTCTGTCTGGTCAAGTCGTGACCCCCGCTAGTGTCCAGTATTATGGTTTCAAGCGCAATCGTCTGCGC
TTTAGCCTCAAGCAGGGAGAAGTCGTTTTTGCGGTGAATTTCTTTAACCAGCCCTATCTGGCTGATAAGATAGAGTTGGG
TGCAACTCTTGCTGTCTTTGGAAAATGGGACCGTGCCAAGGCCAGTTTGACTGGGATGAAGGTTCTAGCTCAAGTGGAAG
ATGACCTCCAGCCGGTCTATCGTCTGGCTCAGGGAATCAGTCAGGCCAGTCTGGTCAAGGTCATTAAGACAGCCTTTGAT
CAGGGGTTGGACCTCTTGATTGAGGAAAATCTTCCCCAGTCTTTACTTGATAAATACAAACTCATGTCCCGTTGTCAGGC
TGTCCGTGCCATGCATTTTCCCAAGGATTTAGCAGAATACAAGCAGACCCTTCGCCGTATCAAGTTTGAAGAACTTTTCT
ACTTTCAAATGCAGCTACAGACCCTCAAGTCTGAAAATAGAGTTCAGGGAAGTGGTCTGGTTCTGAATTGGTCTAAGGAA
AAGGTGACAGCTGCTAAAGAAAATCTGCCTTTTTCTCTGACCCCAGCTCAGGAAAAGAGTTTGCGGGAAATTTTGGCTGA
CATGAAGTCCGACCACCACATGAATCGTCTCTTACAAGGGGATGTGGGGAGTGGAAAGACGGTGGTTGCGGGTTTGGCCA
TGTTTGCGGCGGTGACGGCTGGCTACCAGGCGGCCCTCATGGTGCCAACAGAGATTCTAGCAGAGCAGCATTTTGAGAGT
TTGAAGAGTCTTTTTCCGGACTTGAAACTCGCTCTTTTGACGGGTTCCTTGAAAGCTACAGAAAAAAGAGAAGTCTTGGA
GACCATTGCCAAGGGTGAGGCTGACTTTATTATCGGGACTCATGCTCTGATTCAGGATGGAGTGGATTATGCTCGTCTTG
GCTTGATTATCATTGATGAGCAGCACCGTTTTGGTGTGGGGCAAAGGCGTATTCTGAGAGAAAAAGGCGACAATCCTGAC
GTTCTCATGATGACGGCGACACCCATTCCCCGGACGCTGGCTATCACGGCCTTTGGGGATATGGATGTTTCCATTATCGA
CCAGATGCCAGCAGGGCGGAAGCCTATTGTGACTCGTTGGATTAAGCATGAGCAGCTGCCTCAGGTCTTGACTTGGTTAG
AGGGAGAAATTCAAAAAGGTTCGCAAGCCTACGTCATCTCTCCCTTGATTGAAGAATCAGAAGCTCTGGATCTGAAAAAT
GCCATTGCCTTATCTGAGGAATTGACGGCTCATTTTGCAGGCAAGGCAGAGGTGGCTCTTCTACATGGTAAGATGAAGAG
TGACGAAAAAGACCAGATCATGCAGGATTTCAAAGAGAGAAAAACAGATATTCTAGTATCTACAACTGTTATCGAGGTTG
GGGTTAATGTCCCCAATGCGACCGTCATGATTATCATGGATGCTGATCGCTTCGGTCTCAGCCAGCTTCACCAGCTCAGA
GGTCGTGTTGGTCGGGGTGACAAGCAGTCCTATGCTGTTCTCGTTGCCAATCCCAAGACGGATTCTGGGAAAGACCGCAT
GCGCATCATGACAGAAACGACTAATGGTTTTATCCTTGCGGAGGAAGATTTGAAAATGCGTGGTTCTGGAGAGATTTTTG
GAACCAGACAGTCAGGACTTCCAGAGTTTCAAGTGGCTGATATTATCGAAGATTTTCCGATTTTAGAAGAGGCCAGAAAG
GTTGCCAGCTACATTAGTTCGATAGAAGGTTGGCAAGAGGATCCAGAATGGCGCATGATTGCTCTACACCTAGAGAAGAG
AGAACATCTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

RecG wedge domain (RecG_wedge)

(11-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-664)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

96.721

100

0.967
  recG/mmsA Streptococcus pneumoniae R36A

96.721

100

0.967
  recG Bacillus subtilis subsp. subtilis str. 168

49.625

99.404

0.493
  recG Neisseria meningitidis strain C311

38.576

100

0.387

Multiple sequence alignment