Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   GE024_RS08840 Genome accession   NZ_CP046521
Coordinates   1770874..1772889 (-) Length   671 a.a.
NCBI ID   WP_003045114.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765874..1777889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS08825 (GE024_08865) - 1767138..1767590 (+) 453 WP_093998815.1 universal stress protein -
  GE024_RS08830 (GE024_08870) - 1767925..1769313 (-) 1389 WP_093998816.1 Cof-type HAD-IIB family hydrolase -
  GE024_RS08835 (GE024_08875) - 1769386..1770351 (+) 966 WP_003045108.1 asparaginase -
  GE024_RS11235 - 1770515..1770666 (-) 152 Protein_1687 aldo/keto reductase family oxidoreductase -
  GE024_RS08840 (GE024_08880) recG/mmsA 1770874..1772889 (-) 2016 WP_003045114.1 ATP-dependent DNA helicase RecG Machinery gene
  GE024_RS08845 (GE024_08885) - 1772990..1774444 (-) 1455 WP_171004481.1 ATP-binding cassette domain-containing protein -
  GE024_RS08850 (GE024_08890) - 1774381..1775061 (-) 681 WP_093998818.1 energy-coupling factor transporter transmembrane component T -
  GE024_RS08855 (GE024_08895) - 1775058..1775651 (-) 594 WP_093998819.1 MptD family putative ECF transporter S component -
  GE024_RS08860 (GE024_08900) - 1775648..1777318 (-) 1671 WP_093998820.1 amino acid ABC transporter ATP-binding/permease protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 74921.04 Da        Isoelectric Point: 9.1096

>NTDB_id=352620 GE024_RS08840 WP_003045114.1 1770874..1772889(-) (recG/mmsA) [Streptococcus canis strain HL_100]
MLLTAPIASLKGLGPKSAEKFQKLAIYQVKDLLLYYPFRYEDFKSKSIVELLDGEKAVLTGTIVTPPSVQYYGFKRNRLT
FKLKQGEVVIGVSFFNQPYLQDKLILGNEVAIFGKWDQKKTALTGMKLLMTLEDDLQPVYHVAQGISQTALIKAIKAAFD
SGALASLKENLPDHLLAKYRLMPRQEAVYAMHFPKTLSEYKQALRRIKFEELFYFQMQLQVLKRANKSESNGLAIAFDQE
KLDHKIAALPFPLTQAQEQSLKEILKDMRSGAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LSQLFPDLSIAILTSGMKVPEKRTALATIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLNTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVALEAELKAYFKKSARIALMHGKMKTDEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMLIMDADRFGLSQLHQLR
GRVGRGHKQSYAVLVANPKTESGKERMTIMTKTNDGFVLAEADLKMRGAGEIFGTRQSGIPEFKTADIVEDYAILEEARK
VAVAIVSEPNWQQQAKWQSIVSHLEIKGDFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=352620 GE024_RS08840 WP_003045114.1 1770874..1772889(-) (recG/mmsA) [Streptococcus canis strain HL_100]
ATGTTATTAACAGCCCCCATTGCTAGCTTAAAAGGCTTAGGCCCTAAGTCAGCAGAAAAATTTCAAAAATTAGCTATTTA
TCAAGTGAAAGACCTCTTGCTCTATTACCCGTTTCGTTACGAGGATTTTAAGAGCAAGTCTATTGTTGAGCTTTTAGATG
GTGAAAAGGCTGTGCTCACAGGTACCATTGTGACGCCACCCAGTGTGCAATATTATGGCTTTAAGCGGAATCGGTTGACT
TTTAAATTGAAACAAGGCGAAGTGGTCATAGGGGTTAGTTTTTTTAACCAGCCTTATTTACAGGACAAATTGATTTTAGG
TAATGAGGTCGCTATTTTTGGAAAATGGGATCAGAAAAAAACGGCCTTGACAGGGATGAAATTACTCATGACCTTGGAAG
ATGATTTGCAGCCAGTTTATCATGTGGCTCAGGGCATTAGTCAAACGGCCCTGATAAAAGCTATCAAAGCAGCTTTTGAT
AGCGGAGCTTTAGCAAGTCTAAAGGAAAATCTGCCTGATCACCTCCTTGCTAAATACCGATTAATGCCAAGGCAAGAAGC
GGTTTATGCCATGCATTTTCCCAAAACCTTGAGTGAGTACAAGCAGGCCTTGAGACGCATTAAATTTGAGGAACTCTTTT
ATTTTCAAATGCAGTTGCAGGTATTGAAGCGAGCAAACAAATCAGAGAGTAATGGACTGGCTATTGCCTTTGATCAAGAA
AAGCTTGATCACAAAATTGCTGCTCTGCCATTCCCCTTGACCCAAGCTCAGGAACAAAGTCTAAAGGAAATTTTAAAGGA
TATGCGTTCAGGTGCCCACATGAATCGGCTCTTGCAAGGAGATGTTGGATCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCTGCCTATACTGCTGGCCTCCAATCAGCCCTGATGGTGCCCACAGAAATTCTTGCCGAGCAACATTATGATAGT
CTGAGCCAGCTCTTTCCTGACCTTTCTATTGCTATTCTGACCTCAGGCATGAAGGTTCCTGAAAAACGCACAGCTTTAGC
GACTATTGCAGATGGATCGGTGGATATGATTGTGGGGACTCACGCGCTGATTCAGGATGCGGTTCAATACCACAAGTTAG
GTCTTGTCATTACAGATGAACAGCACCGATTTGGGGTTAAACAGCGCCGTATTTTCCGTGAAAAAGGCGATAATCCAGAT
GTCCTTATGATGACAGCAACTCCTATTCCAAGAACCTTAGCTATTACAGCCTATGGGGAAATGGATGTGTCCATTATTGA
CGAATTACCAGCTGGTCGAAAACCCATTGTCACGCGCTGGGTCAAGCATCAACAATTGAACACCGTTTTAGCTTGGATGA
AAACTGAACTGGAACAAGGAGCACAAGCCTATGTGATTTCTCCTTTGATTGAGGAATCTGAAGCCTTGGATCTTAAAAAT
GCTGTTGCCTTGGAAGCTGAATTAAAGGCCTATTTTAAGAAATCCGCCCGCATTGCTCTGATGCATGGTAAGATGAAGAC
CGACGAAAAAGAAGCCATCATGCAAGCTTTCAAAGCACAGGAAATTGATCTCTTGGTCTCAACAACAGTTATTGAAGTCG
GTGTCAATGTGCCTAACGCTAGTATCATGCTGATTATGGATGCCGACCGTTTTGGCCTTAGTCAACTGCATCAGCTACGT
GGGCGCGTAGGCCGTGGACACAAACAGTCTTATGCGGTGCTGGTGGCCAATCCTAAGACGGAATCGGGTAAGGAACGCAT
GACCATTATGACAAAAACTAATGATGGCTTTGTTCTGGCTGAAGCAGACCTCAAAATGAGAGGGGCTGGGGAAATTTTTG
GAACCCGTCAGTCTGGTATTCCAGAATTTAAGACTGCAGATATTGTCGAAGATTATGCCATTTTAGAAGAGGCTCGCAAG
GTAGCAGTAGCCATTGTTTCTGAGCCTAATTGGCAGCAGCAAGCAAAATGGCAGAGCATTGTTAGTCATCTTGAAATCAA
AGGGGATTTTGATTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

Helicase conserved C-terminal domain (Helicase_C)

(453-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-658)

RecG wedge domain (RecG_wedge)

(7-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.449

100

0.694
  recG/mmsA Streptococcus pneumoniae R36A

69.449

100

0.694
  recG Bacillus subtilis subsp. subtilis str. 168

51.149

97.317

0.498
  recG Neisseria meningitidis strain C311

39.574

97.914

0.387