Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   E4J95_RS07830 Genome accession   NZ_CP038229
Coordinates   1630658..1632850 (-) Length   730 a.a.
NCBI ID   WP_053520925.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MJ163     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625658..1637850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4J95_RS07815 (E4J95_08175) lepA 1627162..1628985 (-) 1824 WP_000368345.1 translation elongation factor 4 -
  E4J95_RS07820 (E4J95_08180) rpsT 1629331..1629582 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  E4J95_RS07825 (E4J95_08185) holA 1629627..1630601 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  E4J95_RS07830 (E4J95_08190) comEC 1630658..1632850 (-) 2193 WP_053520925.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E4J95_RS07835 (E4J95_08195) - 1632855..1633316 (-) 462 WP_000439693.1 ComE operon protein 2 -
  E4J95_RS07840 (E4J95_08200) comEA 1633408..1634094 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  E4J95_RS07845 (E4J95_08205) - 1634134..1634850 (-) 717 Protein_1552 class I SAM-dependent methyltransferase -
  E4J95_RS07850 (E4J95_08210) rsfS 1634853..1635206 (-) 354 WP_001088020.1 ribosome silencing factor -
  E4J95_RS07855 (E4J95_08215) yqeK 1635207..1635791 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  E4J95_RS07860 (E4J95_08220) nadD 1635781..1636350 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  E4J95_RS07865 (E4J95_08225) yhbY 1636353..1636643 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  E4J95_RS07870 (E4J95_08230) aroE 1636647..1637453 (-) 807 WP_169449283.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 84515.51 Da        Isoelectric Point: 10.0650

>NTDB_id=352445 E4J95_RS07830 WP_053520925.1 1630658..1632850(-) (comEC) [Staphylococcus aureus strain MJ163]
MLYVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQ
VIQIQRQGSDTYKGRLSLKNEIYPFFLTNKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLESNRSNLIEK
HKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYKPLKRLNLPLFVIKGIT
IIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQ
QLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFH
DWLLDLFTRIKQSHFSVPKFNDWIFIISVYYIFWLLAKRKYILVTVWTIIILTLLITFPTNSHHKITMLNVGQGDSILYE
GGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSS
NTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKY
NLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVD
SNSYGNASGL

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=352445 E4J95_RS07830 WP_053520925.1 1630658..1632850(-) (comEC) [Staphylococcus aureus strain MJ163]
TTGCTGTATGTCGCGTTATCAATGATTGTAGGAGTGCTTTGGAATTCTAGCAAAGTGCTCTCTACATTTCTTTTCATTTT
ACTTTTGTATATTACTTATCGTAAAAATAAAATCGTTTATGCCCCTATTTCTCTCTTTTTAATCATTTTCTCCTCATGGT
ATTTACATTATTCACAACAAGCAATATTTAATTATATCAATTATATTGAACGTAATTCTCAGTTTAATGAGCGTGCTCAA
GTAATCCAAATTCAACGTCAAGGTAGTGACACATATAAAGGTAGGTTGAGTTTAAAAAATGAAATATATCCTTTCTTTTT
AACAAATAAAAAGAATTTTGATTTAAAGAAAATTGAAAGTCGTAATTGTATTGTTAAAGGACAATTCAAAGTTAATGACA
ATAAGTTTGTAACTCTTAAATTACAAAGTATAGTTGTACAAAGCTGCCTAGAATCGAACCGGTCTAATTTAATTGAGAAA
CATAAACAGTTTATAATGAATCGAATTTATGATTCGGGTATTAAGTTTCCGGATCGTATTATGGCATTGATTACTGGTGA
CGTAAAAGAAATTAATGAGCAATTTAAGGAACGTGTTAAAGAGATAGGTATATATCATTTGCTGGCAGTTAGTGGCTCGC
ATATAGCTGCAATTGTATTCTTAATTTACAAACCTTTAAAACGATTAAATTTACCTTTATTTGTCATTAAAGGAATTACA
ATCATTGTATTAGCTTTATTTGCTCAATACACAAATTATGCACCTAGTGCTGTAAGAGCTATAATAATGACAACTCTTGT
ACTGCTTATTACTAAGCAAATTAAAATAAAGGGTATTCAGCTATTAGCATTTGCATTTATAATTATGTTTATTTTAAATC
CACTAGTTGTTTATGATATTGGATTTCAATTTTCATTCATCATTTCATTTTTTATTATGCTACTTTTTCCTTTTTTACAG
CAATTGTCAAAGTTACAATCATTATTCATAATTACGTTTATTGCACAATTAGCTTCATTTATCGTTGCCATTCCAAACTT
TCATCAACTTCAATGGGTGGGATTTTTATCTAATTTGATTTTTGTACCGTACTATTCGATTATATTGTTTCCGCTATCTA
TTTTATTCTTTATTACAAGTCATTTTATTGTGGGATTAACGCCGCTAAATTACTTGGTTGACCTAAGTTTTAATTTTCAT
GACTGGTTACTAGACCTATTCACAAGAATCAAGCAATCACATTTTTCTGTTCCCAAGTTTAATGATTGGATATTTATAAT
TTCTGTTTATTACATATTTTGGTTATTGGCTAAACGTAAATATATATTGGTTACGGTTTGGACTATAATTATTCTGACAT
TATTAATAACGTTTCCAACAAATTCACATCACAAAATTACAATGTTAAATGTGGGGCAGGGAGACAGTATTTTATATGAA
GGCGGTAAGAACCAAAATGTCTTGATTGATACAGGTGGGAAAGTGATTGATGATACTAAACAACCTAGTTATTCAATTTC
TAAATATCATATTTTACCAACGCTAAATGAAAGAGGGATAAATGAATTAGAGTATCTAATTTTAACACATCCACACAATG
ACCATATTGGTGAAGTGGAATATATTATTAGTCATATTAAAATTAAACATATAGTGATATACAATAAGGGATATAGTAGT
AATACATTGATGTTATTATCGAAATTAAGCCATAAGTACAACATTAAACTTATGGATGTAAGACAAGTTAGTAGTTTTAA
ACTTGGAGATAGTAGTTTTCTATTTTTTGATAGTTTTATTCCAAATAGCCGAGATAAAAATGAGTATTCGATTATTACTA
TGATTACATATCAAAATAAAAAAGTTTTATTAATGGGCGATGCTAGTAAAAATAATGAATCTTTACTACTAAAAAAATAT
AACTTGCCGGAGATTGATATTTTAAAAGTAGGACATCATGGGAGCAAGACAAGTAGTTCTAAAGAATTTATAGAGATGAT
TAAGCCTAAAATAAGTTTGATTTCTTCTGGGAAGAACAATATGTATCATCTTCCTAATATAGAAGTTGTTAAACGATTGC
AAAGGATTCGCAGTCGCATTTACAATAGTCAACAAAACGGTCAAGTTACAATTGACTTAGATGATAATTTAAAAGTTGAT
TCAAACTCTTATGGAAATGCAAGTGGTTTATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(183-438)

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Staphylococcus aureus MW2

99.181

100

0.996
  comEC Staphylococcus aureus N315

98.772

100

0.992

Multiple sequence alignment