Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   GFX43_RS00610 Genome accession   NZ_CP046448
Coordinates   100424..100654 (-) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZD01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95424..105654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFX43_RS00600 (GFX43_000600) spoVT 96149..96685 (-) 537 WP_003218365.1 stage V sporulation protein T -
  GFX43_RS00605 (GFX43_000605) mfd 96821..100354 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  GFX43_RS00610 (GFX43_000610) subA/fin 100424..100654 (-) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  GFX43_RS00615 (GFX43_000615) pth 100714..101280 (-) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  GFX43_RS00620 (GFX43_000620) rplYB 101387..102001 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  GFX43_RS00625 (GFX43_000625) prsS 102087..103040 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  GFX43_RS00630 (GFX43_000630) glmU 103063..104433 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  GFX43_RS00635 (GFX43_000635) spoVG 104626..104919 (-) 294 WP_003218346.1 septation regulator SpoVG -
  GFX43_RS00640 (GFX43_000640) ridA 105114..105491 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=352310 GFX43_RS00610 WP_015482693.1 100424..100654(-) (subA/fin) [Bacillus subtilis strain ZD01]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=352310 GFX43_RS00610 WP_015482693.1 100424..100654(-) (subA/fin) [Bacillus subtilis strain ZD01]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987

Multiple sequence alignment