Detailed information NTG0352310

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E3Z29_RS27045
• Genome accession: NZ_CP038207
• Coordinates: 5831247..5832119 (+)
• Length: 290 a.a.
• NCBI ID: WP_134787355.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S150
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5826247..5837119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3Z29_RS27020 (E3Z29_27020)	-	5826438..5826734 (+)	297	WP_134787354.1	DUF2845 domain-containing protein	-
E3Z29_RS27025 (E3Z29_27025)	-	5827000..5827356 (-)	357	WP_025108814.1	BON domain-containing protein	-
E3Z29_RS27030 (E3Z29_27030)	-	5827656..5828096 (-)	441	WP_098965660.1	pilin	-
E3Z29_RS27035 (E3Z29_27035)	pilB	5828325..5830025 (+)	1701	WP_098965662.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E3Z29_RS27040 (E3Z29_27040)	pilC	5830028..5831245 (+)	1218	WP_098965663.1	type II secretion system F family protein	Machinery gene
E3Z29_RS27045 (E3Z29_27045)	pilD	5831247..5832119 (+)	873	WP_134787355.1	A24 family peptidase	Machinery gene
E3Z29_RS27050 (E3Z29_27050)	coaE	5832116..5832739 (+)	624	WP_134787356.1	dephospho-CoA kinase	-
E3Z29_RS27055 (E3Z29_27055)	yacG	5832736..5832933 (+)	198	WP_003228296.1	DNA gyrase inhibitor YacG	-
E3Z29_RS27060 (E3Z29_27060)	-	5832940..5833155 (-)	216	WP_003228298.1	hypothetical protein	-
E3Z29_RS27065 (E3Z29_27065)	-	5833221..5833910 (-)	690	WP_115988876.1	energy-coupling factor ABC transporter permease	-
E3Z29_RS27070 (E3Z29_27070)	-	5834028..5834654 (+)	627	WP_003228301.1	DUF1780 domain-containing protein	-
E3Z29_RS27075 (E3Z29_27075)	-	5834651..5835178 (+)	528	WP_096795222.1	MOSC domain-containing protein	-
E3Z29_RS27080 (E3Z29_27080)	-	5835230..5835403 (+)	174	WP_003228304.1	DUF3094 family protein	-
E3Z29_RS27085 (E3Z29_27085)	-	5835467..5836765 (+)	1299	WP_047600277.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32145.42 Da
• Isoelectric Point: 7.9859

>NTDB_id=352310 E3Z29_RS27045 WP_134787355.1 5831247..5832119(+) (pilD) [Pseudomonas sp. S150]
MPIDELFSLYPLAFVCTALLLGLVVGSFLNVLVWRLPRMLERDWRQQAQDVLGLPTETPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYLVLRGRCSACAAPISKRYPLTELACGLLSAFVAWHLGFGWPAGLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHAALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIVGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=352310 E3Z29_RS27045 WP_134787355.1 5831247..5832119(+) (pilD) [Pseudomonas sp. S150]
ATGCCTATCGACGAACTCTTCAGTCTGTATCCGCTGGCCTTTGTGTGCACCGCCCTGCTGTTGGGTCTGGTGGTCGGCAG
TTTCCTCAACGTACTGGTCTGGCGCCTGCCGAGAATGCTCGAGCGCGATTGGCGCCAGCAGGCGCAGGACGTCCTCGGCC
TGCCGACCGAAACGCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCCAGTGCCCACACTGCGGCCACCGGATTCGG
GCTTGGGAAAACATTCCGCTGCTCAGTTACCTGGTGCTGCGCGGACGCTGTTCGGCGTGTGCCGCGCCCATCAGCAAACG
TTATCCCCTGACCGAACTGGCCTGCGGCCTGCTTTCGGCATTCGTTGCCTGGCATTTGGGTTTCGGCTGGCCGGCGGGCC
TGTTGATCGTCCTTACCTGGGGGCTGCTGGCGATGAGCCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
TTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGTTTCGGGCTGTTCGTCTCGCTGCACGCGGCGTTGTGGGGTGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGACGGCATCGGCCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACAATCCTGCTGTCGTCGCTGGTGGGG
GCGATTGTCGGAGTGATTCTGCTACGTCTGCGTGAGCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.546	97.241	0.521
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter nosocomialis M2	50.562	92.069	0.466
pilD	Acinetobacter baumannii D1279779	49.813	92.069	0.459
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459