Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   GNT62_RS22015 Genome accession   NZ_CP046406
Coordinates   4643936..4645948 (-) Length   670 a.a.
NCBI ID   WP_003091426.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SE5458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4638936..4650948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNT62_RS22000 (GNT62_21935) - 4640326..4641246 (-) 921 WP_003091419.1 LysR family transcriptional regulator -
  GNT62_RS22005 (GNT62_21940) - 4641349..4642383 (+) 1035 WP_179062948.1 HlyD family secretion protein -
  GNT62_RS22010 (GNT62_21945) - 4642433..4643932 (+) 1500 WP_073660307.1 MDR family MFS transporter -
  GNT62_RS22015 (GNT62_21950) uvrB 4643936..4645948 (-) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene
  GNT62_RS22020 (GNT62_21955) - 4646136..4647332 (+) 1197 WP_003091428.1 amino acid aminotransferase -
  GNT62_RS22030 (GNT62_21965) comEA/comE1 4647549..4647878 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  GNT62_RS22035 (GNT62_21970) - 4648069..4650066 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76052.35 Da        Isoelectric Point: 5.2050

>NTDB_id=352083 GNT62_RS22015 WP_003091426.1 4643936..4645948(-) (uvrB) [Pseudomonas aeruginosa strain SE5458]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNSNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRIIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKNERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNQAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=352083 GNT62_RS22015 WP_003091426.1 4643936..4645948(-) (uvrB) [Pseudomonas aeruginosa strain SE5458]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAAGCCATCCGGCAGATGGTCGAGGGGCT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTGGGGGTGACGGGCTCTGGCAAGACTTTCAGCATCGCCAACGTGATTGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCAAACAAGACCCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTC
CCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCGTCTTCCGATACCTA
TATCGAGAAGGACTCCTCGATCAACGACCATATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGCGAACTGTTACGGCGACTGACCAGCCTGCAGTACACCCGCAACGACATGGATTT
CGCCCGTGCGACTTTCCGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATTCGTGTCG
AGTTGTTCGACGACGAGGTGGAAAGCCTCTCGGCCTTCGATCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACTCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAGCAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACCCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTATCTTTCCGGGCGGGCCCCCGGCGAGCCG
CCGCCGACGCTCTACGACTACCTGCCGGCCAACTCGCTGCTGGTTATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
TGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTGGTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCG
GAACATGCCGGGCGGATCATCGAGCAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGCCCGGCGAT
GACCCAGGTGGATGACCTGCTCTCGCAGATCCGCCAGCGGGTGGCCAAGAACGAGCGGGTGCTGGTGACTACCCTGACCA
AGCGCATGGCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTGCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTGCGCGAAGG
CCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCCGACAACGTCACCGGCTCGATGCAG
CGTGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCGTTCAACCAAGCCCATGGCATCGTGCCCAAGGGGGT
GCGCAAGGATATCAAGGACATTCTCGAAGGCGCCGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGG
CGGAGGAGAGCGGGCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAG
ATGTACCAGTTGGCCCGCGACCTGGAGTTCGAGGCGGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(11-118)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

UvrB/uvrC motif (UVR)

(632-665)

UvrB interaction domain (UvrB_inter)

(158-248)

Ultra-violet resistance protein B (UvrB)

(550-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

57.686

98.06

0.566
  uvrB Streptococcus pneumoniae TIGR4

57.686

98.06

0.566
  uvrB Streptococcus pneumoniae D39

57.686

98.06

0.566