Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E3T45_RS09890 | Genome accession | NZ_CP038170 |
| Coordinates | 1986429..1986941 (+) | Length | 170 a.a. |
| NCBI ID | WP_002288368.1 | Uniprot ID | - |
| Organism | Enterococcus faecium strain SDGJP3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1981429..1991941
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3T45_RS09880 (E3T45_10395) | gyrA | 1983373..1985844 (+) | 2472 | WP_223603055.1 | DNA gyrase subunit A | - |
| E3T45_RS09885 (E3T45_10400) | rpsF | 1986080..1986379 (+) | 300 | WP_002288366.1 | 30S ribosomal protein S6 | - |
| E3T45_RS09890 (E3T45_10405) | ssb | 1986429..1986941 (+) | 513 | WP_002288368.1 | single-stranded DNA-binding protein | Machinery gene |
| E3T45_RS09895 (E3T45_10410) | rpsR | 1986967..1987203 (+) | 237 | WP_002288370.1 | 30S ribosomal protein S18 | - |
| E3T45_RS09900 (E3T45_10415) | - | 1987346..1989319 (+) | 1974 | WP_002288371.1 | DHH family phosphoesterase | - |
| E3T45_RS09905 (E3T45_10420) | rplI | 1989325..1989777 (+) | 453 | WP_002288372.1 | 50S ribosomal protein L9 | - |
| E3T45_RS09910 (E3T45_10425) | dnaB | 1990051..1991418 (+) | 1368 | WP_002288373.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18451.99 Da Isoelectric Point: 4.6742
>NTDB_id=352014 E3T45_RS09890 WP_002288368.1 1986429..1986941(+) (ssb) [Enterococcus faecium strain SDGJP3]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=352014 E3T45_RS09890 WP_002288368.1 1986429..1986941(+) (ssb) [Enterococcus faecium strain SDGJP3]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAATT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAATT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.322 |
100 |
0.618 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.983 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
62.353 |
0.388 |