Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYNPCCN_RS14660 Genome accession   NC_017052
Coordinates   3150772..3151131 (-) Length   119 a.a.
NCBI ID   WP_010874013.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. PCC-N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3145772..3156131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCCN_RS14645 (SYNPCCN_2821) - 3146255..3146746 (-) 492 WP_010874010.1 methyl-accepting chemotaxis protein -
  SYNPCCN_RS14650 (SYNPCCN_2822) - 3146792..3149794 (-) 3003 WP_010874011.1 methyl-accepting chemotaxis protein -
  SYNPCCN_RS14655 (SYNPCCN_2823) - 3150056..3150634 (-) 579 WP_020861981.1 chemotaxis protein CheW -
  SYNPCCN_RS14660 (SYNPCCN_2824) pilH 3150772..3151131 (-) 360 WP_010874013.1 response regulator Machinery gene
  SYNPCCN_RS14665 (SYNPCCN_2825) - 3151269..3152477 (-) 1209 WP_010874014.1 response regulator -
  SYNPCCN_RS14670 (SYNPCCN_2826) - 3152727..3154481 (+) 1755 WP_010874015.1 M61 family metallopeptidase -
  SYNPCCN_RS14675 (SYNPCCN_2827) - 3154577..3155494 (+) 918 WP_010874016.1 branched-chain amino acid transaminase -
  SYNPCCN_RS14680 (SYNPCCN_2828) gatC 3155551..3155865 (+) 315 WP_010874017.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13181.15 Da        Isoelectric Point: 4.5778

>NTDB_id=35173 SYNPCCN_RS14660 WP_010874013.1 3150772..3151131(-) (pilH) [Synechocystis sp. PCC 6803 substr. PCC-N]
MGSALVIDDSSTERSIISDFCQKLGINVTTAISGEEALEKLSQAVPDVIILDIVLPGRSGFEICRELKDKDRTKSIPIIL
CSTKATDMDKFWGKRQGADAYITKPIDQEEFNTVIKQFI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=35173 SYNPCCN_RS14660 WP_010874013.1 3150772..3151131(-) (pilH) [Synechocystis sp. PCC 6803 substr. PCC-N]
ATGGGCAGCGCACTTGTTATTGACGATTCCTCTACAGAACGTTCAATTATCAGTGATTTTTGTCAGAAACTAGGCATTAA
CGTCACCACCGCCATCAGTGGAGAAGAAGCCCTGGAAAAACTTTCCCAGGCAGTGCCGGACGTAATTATCTTAGATATTG
TGCTGCCGGGGCGCAGTGGTTTTGAAATTTGTCGAGAATTGAAAGACAAAGACCGGACTAAAAGTATTCCAATAATCCTC
TGTTCCACTAAGGCCACGGATATGGATAAATTTTGGGGCAAACGCCAAGGGGCGGACGCCTATATTACTAAACCCATTGA
CCAAGAGGAGTTCAACACGGTAATCAAGCAATTTATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.059

100

0.471
  micA Streptococcus pneumoniae Cp1015

36.975

100

0.37
  vicR Streptococcus mutans UA159

36.134

100

0.361

Multiple sequence alignment