Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   E3U44_RS01215 Genome accession   NZ_CP038033
Coordinates   245735..247069 (-) Length   444 a.a.
NCBI ID   WP_134356292.1    Uniprot ID   A0A4P7BY05
Organism   Nitrosococcus wardiae strain D1FHS     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 240735..252069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U44_RS01165 (E3U44_01165) - 240939..241229 (+) 291 WP_134356284.1 nucleotidyltransferase family protein -
  E3U44_RS01170 (E3U44_01170) - 241226..241597 (+) 372 WP_134356285.1 DUF86 domain-containing protein -
  E3U44_RS01175 (E3U44_01175) - 241618..242789 (-) 1172 Protein_234 RNA-guided endonuclease InsQ/TnpB family protein -
  E3U44_RS01180 (E3U44_01180) tnpA 242845..243273 (+) 429 WP_134356286.1 IS200/IS605 family transposase -
  E3U44_RS01190 (E3U44_01190) - 243652..243915 (-) 264 WP_134356287.1 type II toxin-antitoxin system RelE family toxin -
  E3U44_RS01195 (E3U44_01195) - 243893..244114 (-) 222 WP_134356288.1 ribbon-helix-helix protein, CopG family -
  E3U44_RS01200 (E3U44_01200) - 244227..244790 (-) 564 WP_134356289.1 Uma2 family endonuclease -
  E3U44_RS01205 (E3U44_01205) - 244830..245240 (-) 411 WP_134356290.1 type II toxin-antitoxin system VapC family toxin -
  E3U44_RS01210 (E3U44_01210) - 245237..245506 (-) 270 WP_134356291.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  E3U44_RS01215 (E3U44_01215) pilR 245735..247069 (-) 1335 WP_134356292.1 sigma-54-dependent transcriptional regulator Regulator
  E3U44_RS01220 (E3U44_01220) - 247066..248715 (-) 1650 WP_240761683.1 two-component system sensor histidine kinase NtrB -
  E3U44_RS20250 (E3U44_01225) - 248678..248905 (-) 228 WP_134356294.1 PP0621 family protein -
  E3U44_RS01230 (E3U44_01230) typA 248909..250738 (-) 1830 WP_134356295.1 translational GTPase TypA -
  E3U44_RS01235 (E3U44_01235) suhB 250958..251755 (-) 798 WP_134356296.1 inositol-1-monophosphatase -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49106.99 Da        Isoelectric Point: 6.7167

>NTDB_id=351642 E3U44_RS01215 WP_134356292.1 245735..247069(-) (pilR) [Nitrosococcus wardiae strain D1FHS]
MKECPLALLVDDEPDILELLELTLAPMGVACQKAVNLAEARQYLQQHSFDLCLTDMRLPDGDGIELVRLIGQHYPETPVA
VITAHGSVETAVDALKSGAFDFISKPVDLQALRNLTHAALRLPLRYPQKERRTRYRLLGESAAMRAVRSKIAKLARSQAP
VYISGESGTGKELVARLIHEQGPRLEAPFVPVNCGAIPNELMESEFFGHKKGSFTGATHDKRGLFQAANGGTLFLDEVAD
LPLPMQVKLLRAIQEKNVRPIGSEKEIFVDVRILCATHKDLAALVKEGSFRQDLFYRLNVIELPVPPLRQRASDIPQLAE
HILSKLAGINQITCPKLTPDALEALQVYPFPGNVRELENILERAMTLCESEIIAAKDLHLPKAEPPSAPTSLPVGSLEEC
LEGVERQAILQALEQTHYNKTAAAKLLGITFRALRYRLKKLELE

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=351642 E3U44_RS01215 WP_134356292.1 245735..247069(-) (pilR) [Nitrosococcus wardiae strain D1FHS]
ATGAAAGAATGTCCCTTGGCCCTTCTTGTGGACGATGAGCCGGATATTTTAGAGTTACTTGAACTCACCCTGGCGCCCAT
GGGTGTGGCCTGTCAAAAGGCGGTTAATCTTGCCGAAGCCCGCCAATATTTGCAGCAACATTCCTTTGATCTCTGCCTGA
CGGATATGCGCCTTCCAGATGGGGATGGTATCGAGCTGGTTAGGCTCATTGGCCAGCATTACCCGGAGACTCCGGTCGCG
GTGATTACGGCTCATGGCAGTGTGGAGACCGCAGTTGACGCTTTGAAGTCGGGTGCTTTTGATTTTATCTCTAAACCGGT
GGACTTGCAGGCGCTTCGTAATCTGACCCATGCAGCCCTTAGACTCCCGCTTCGTTATCCCCAAAAAGAGCGGCGGACCC
GCTACCGGTTACTAGGCGAGTCGGCTGCCATGCGGGCGGTACGCTCCAAAATCGCCAAGCTGGCACGGAGCCAAGCGCCG
GTCTACATTAGCGGTGAATCGGGCACCGGCAAGGAACTGGTCGCCAGGCTTATCCATGAGCAAGGGCCTCGCTTGGAAGC
GCCCTTTGTGCCGGTAAACTGTGGCGCTATCCCCAATGAGCTGATGGAAAGCGAGTTTTTCGGCCATAAAAAGGGCAGCT
TTACCGGCGCTACCCATGACAAGCGGGGGTTATTTCAAGCCGCCAATGGAGGCACCCTGTTTTTGGATGAGGTGGCCGAC
TTACCTTTACCTATGCAGGTTAAACTTCTGCGGGCTATCCAGGAAAAGAATGTGCGGCCTATTGGCAGCGAAAAAGAAAT
CTTCGTGGATGTGCGTATTCTCTGTGCTACCCACAAGGACTTAGCCGCCTTAGTCAAGGAAGGTAGCTTCCGTCAGGATC
TCTTCTACCGGCTTAATGTCATTGAATTGCCTGTTCCGCCCTTAAGACAGCGGGCCAGCGATATTCCCCAGTTGGCCGAG
CATATTTTGAGTAAGCTTGCCGGGATTAATCAAATCACTTGTCCTAAGTTGACTCCTGATGCCCTAGAAGCGCTACAAGT
TTACCCTTTCCCGGGCAATGTCCGAGAGTTGGAAAATATCCTCGAGCGCGCCATGACCTTGTGTGAATCCGAGATCATTG
CGGCCAAAGATTTGCACCTACCTAAGGCGGAACCCCCCAGTGCCCCAACCTCCCTGCCGGTAGGTTCGTTGGAAGAGTGT
TTAGAAGGCGTGGAAAGGCAGGCCATTCTCCAGGCTTTGGAACAAACCCATTATAACAAGACCGCTGCCGCCAAGCTTCT
TGGCATTACCTTTCGGGCTTTGCGTTACCGTTTAAAAAAGTTGGAGTTGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(401-441)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7BY05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

66.063

99.55

0.658
  pilR Acinetobacter baumannii strain A118

49.892

100

0.518
  luxO Vibrio cholerae strain A1552

38.249

97.748

0.374

Multiple sequence alignment