Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   E3H47_RS05090 Genome accession   NZ_CP038022
Coordinates   1085464..1086180 (-) Length   238 a.a.
NCBI ID   WP_138000632.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080464..1091180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS05070 (E3H47_05070) - 1081253..1082572 (+) 1320 WP_005025384.1 adenylosuccinate synthase -
  E3H47_RS05075 (E3H47_05075) - 1082717..1083025 (+) 309 WP_005014961.1 phosphoethanolamine transferase domain-containing protein -
  E3H47_RS05080 (E3H47_05080) - 1083343..1084122 (+) 780 WP_005014959.1 M48 family metallopeptidase -
  E3H47_RS05085 (E3H47_05085) - 1084174..1085223 (-) 1050 WP_005025386.1 NADP(H)-dependent aldo-keto reductase -
  E3H47_RS05090 (E3H47_05090) crp 1085464..1086180 (-) 717 WP_138000632.1 cAMP-activated global transcriptional regulator CRP Regulator
  E3H47_RS05095 (E3H47_05095) - 1086327..1086749 (+) 423 WP_138000633.1 OsmC family protein -
  E3H47_RS05100 (E3H47_05100) clpB 1086987..1089566 (+) 2580 WP_138000634.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26768.39 Da        Isoelectric Point: 4.6838

>NTDB_id=351497 E3H47_RS05090 WP_138000632.1 1085464..1086180(-) (crp) [Acinetobacter radioresistens strain DD78]
MNSNFSQLSTDALSPGQLPESVKALLKRAKINRFPKRTTIIDAGTESKSLYLILKGSVSIVLREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTREMCEIAEISYENFHELSKQFPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LASQPEAMILPNGRQIRITRQEIGRIVGCSREIVGRVLKTLEEQGMIETEGKAILIFDSSLEQNNESSASDFDTEDEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=351497 E3H47_RS05090 WP_138000632.1 1085464..1086180(-) (crp) [Acinetobacter radioresistens strain DD78]
ATGAATTCTAATTTTTCACAACTCAGTACTGACGCCCTTTCTCCAGGTCAACTACCTGAATCAGTGAAAGCACTACTAAA
ACGAGCAAAAATTAACAGATTTCCAAAACGTACTACCATTATTGATGCCGGTACAGAATCCAAATCTTTATATCTCATCC
TTAAAGGTTCTGTTTCTATTGTACTGCGCGAAGATGATGACCGTGAAATTGTGGTAGCCTATTTAAATCCAGGTGACTTT
TTCGGAGAAATGGGGCTTTTTGAAGCCAATCCACAACGTACAGCTGAAGTTCGTACCCGGGAGATGTGTGAAATTGCAGA
AATTAGTTATGAGAATTTTCATGAACTGAGTAAACAATTTCCCGATTTAAGCTATGCAGTATTTGCCCAGCTCGTGCGTC
GCCTGAAAAACACTACACGTAAAGTAACTGATCTGGCTTTTATTGATGTGTCTGGACGAATTGCGCGCTGCCTGATTGAT
CTGGCATCTCAGCCTGAGGCCATGATTTTACCTAATGGCCGCCAGATCCGTATTACCCGTCAGGAAATCGGCCGTATTGT
AGGCTGCTCACGTGAAATTGTTGGCCGTGTCCTCAAAACTCTTGAGGAGCAAGGTATGATTGAAACAGAAGGTAAAGCGA
TACTGATCTTTGATAGTTCACTTGAACAGAATAATGAATCATCTGCCTCAGATTTTGATACTGAAGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

87.815

100

0.878
  crp Vibrio cholerae strain A1552

47.596

87.395

0.416
  crp Haemophilus influenzae Rd KW20

48.205

81.933

0.395

Multiple sequence alignment