Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   E3C75_RS10650 Genome accession   NZ_CP038020
Coordinates   2035197..2036234 (-) Length   345 a.a.
NCBI ID   WP_023909891.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 2030197..2041234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS10625 ilvD 2030464..2032167 (-) 1704 WP_084825670.1 dihydroxy-acid dehydratase -
  E3C75_RS10630 - 2032295..2033476 (+) 1182 WP_111679681.1 NAD(P)/FAD-dependent oxidoreductase -
  E3C75_RS10640 trmB 2033697..2034338 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  E3C75_RS10645 - 2034348..2035139 (-) 792 WP_002951667.1 phosphotransferase family protein -
  E3C75_RS10650 pptB 2035197..2036234 (-) 1038 WP_023909891.1 ABC transporter permease Regulator
  E3C75_RS10655 pptA 2036231..2036962 (-) 732 WP_084829044.1 ABC transporter ATP-binding protein Regulator
  E3C75_RS10660 - 2037027..2037452 (+) 426 WP_100273371.1 HIT family protein -
  E3C75_RS10665 - 2037449..2037745 (+) 297 WP_084829046.1 hypothetical protein -
  E3C75_RS10670 - 2037765..2038115 (-) 351 WP_111679682.1 ribonuclease -
  E3C75_RS10675 - 2038153..2038497 (-) 345 WP_100273370.1 hypothetical protein -
  E3C75_RS10680 - 2038517..2039014 (-) 498 WP_223899742.1 hypothetical protein -
  E3C75_RS10685 - 2039075..2040250 (-) 1176 WP_111679683.1 IS256-like element IS1191 family transposase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40202.73 Da        Isoelectric Point: 10.6158

>NTDB_id=351432 E3C75_RS10650 WP_023909891.1 2035197..2036234(-) (pptB) [Streptococcus thermophilus strain ATCC 19258]
MIAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCFLLPFWGNIATYLE
PADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQS
GLNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTVLKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKF
SLILVGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=351432 E3C75_RS10650 WP_023909891.1 2035197..2036234(-) (pptB) [Streptococcus thermophilus strain ATCC 19258]
ATGATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACCACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGA
CCACTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGA
ATCCATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTTTTTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAG
CCTGCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAG
ATTTTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGGTTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTTTTTACCAA
TGTTAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAAC
ATACGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTA
ACACTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTT
CCAGCTCACAGTGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGA
GCAATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTT
AGCCTGATTTTGGTTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.256

99.71

0.98

  pptB Streptococcus salivarius strain HSISS4

92.733

99.71

0.925


Multiple sequence alignment