Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LEBU_RS10825 Genome accession   NC_013192
Coordinates   2313876..2314580 (-) Length   234 a.a.
NCBI ID   WP_015770360.1    Uniprot ID   -
Organism   Leptotrichia buccalis C-1013-b     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2308876..2319580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEBU_RS10805 (Lebu_2168) - 2309975..2310808 (+) 834 WP_015770356.1 glycosyltransferase family 2 protein -
  LEBU_RS10810 (Lebu_2169) pth 2310890..2311456 (-) 567 WP_015770357.1 aminoacyl-tRNA hydrolase -
  LEBU_RS10815 (Lebu_2170) - 2311650..2312300 (-) 651 WP_015770358.1 thiamine diphosphokinase -
  LEBU_RS10820 (Lebu_2171) - 2312486..2313874 (-) 1389 WP_015770359.1 sensor histidine kinase -
  LEBU_RS10825 (Lebu_2172) scnR 2313876..2314580 (-) 705 WP_015770360.1 response regulator transcription factor Regulator
  LEBU_RS10830 (Lebu_2173) - 2314789..2315133 (+) 345 WP_015770361.1 hypothetical protein -
  LEBU_RS10835 (Lebu_2174) - 2315341..2315835 (-) 495 WP_015770362.1 HRDC domain-containing protein -
  LEBU_RS10840 (Lebu_2175) - 2315872..2316339 (-) 468 WP_015770363.1 DUF4825 domain-containing protein -
  LEBU_RS10845 (Lebu_2176) pheT 2316370..2318766 (-) 2397 WP_015770364.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26749.17 Da        Isoelectric Point: 5.9086

>NTDB_id=35140 LEBU_RS10825 WP_015770360.1 2313876..2314580(-) (scnR) [Leptotrichia buccalis C-1013-b]
MIEKYLTNKCILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPDGNGFELLEKLRKTSN
YPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYKKESPIVNLNGCQIDFSCGEIVKDNKNIPLTA
KEYELLQTLYRNAGRIVTIDTLCEAVWGENAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKLIVEGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=35140 LEBU_RS10825 WP_015770360.1 2313876..2314580(-) (scnR) [Leptotrichia buccalis C-1013-b]
ATGATTGAAAAATATTTGACAAATAAATGTATTTTAATTGTTGATGATGAGCAGGAAATTTTAGATATGACTATATCAAT
TTTAGCTGATTACGGGTATAAAAATATACAGACTGCAAAAAGTGTGAAGGAAACTATGAAATGCGTTGAAGAAAAACAGC
CTGATTTAGCGATATTGGATGTTATGCTTCCAGATGGAAACGGTTTTGAATTACTGGAAAAGTTGAGAAAAACCAGTAAT
TATCCAATATTATTTCTTACAGCACGTGGAGAAGATGAGGATAAATTCAAAGGCTTTGGATTAGGGGCGGATGACTATAT
TGTAAAGCCTTTTTTGCCAAAAGAACTTTTGTTTAGAATTACAGCAATTTTGCGGCGAACTTACAAAAAAGAAAGCCCAA
TTGTAAATTTGAATGGCTGTCAAATTGATTTTTCATGTGGAGAAATTGTAAAAGATAATAAAAATATACCGTTAACTGCA
AAGGAATATGAATTATTACAGACTCTTTACCGAAACGCAGGACGTATTGTAACCATTGATACATTGTGTGAAGCTGTATG
GGGCGAAAATGCCTATGTTTATACAAATTCACTGATGACACATATAAGACGTATTAGAGAAAAAATTGAAATTAACCCTT
CCCATCCTGTGTCATTAATAACAATGAAAGGATTAGGCTACAAACTAATTGTGGAGGGAAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.299

0.5
  vicR Streptococcus mutans UA159

40.175

97.863

0.393
  micA Streptococcus pneumoniae Cp1015

39.056

99.573

0.389

Multiple sequence alignment