Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   GL188_RS10060 Genome accession   NZ_CP046359
Coordinates   1957428..1957922 (-) Length   164 a.a.
NCBI ID   WP_224757748.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 573     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1952428..1962922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL188_RS10030 (GL188_10190) - 1952737..1953612 (+) 876 WP_000669493.1 substrate-binding domain-containing protein -
  GL188_RS10035 (GL188_10195) pstC 1953730..1954593 (+) 864 WP_000165892.1 phosphate ABC transporter permease subunit PstC -
  GL188_RS10040 (GL188_10200) pstA 1954586..1955401 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  GL188_RS10045 (GL188_10205) pstB 1955403..1956155 (+) 753 WP_000536449.1 phosphate ABC transporter ATP-binding protein PstB -
  GL188_RS10050 (GL188_10210) phoU 1956170..1956820 (+) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  GL188_RS10055 (GL188_10215) - 1956861..1957313 (+) 453 Protein_1962 transposase -
  GL188_RS10060 (GL188_10220) comR 1957428..1957922 (-) 495 WP_224757748.1 helix-turn-helix domain-containing protein Regulator
  GL188_RS10065 (GL188_10225) - 1958080..1959096 (+) 1017 WP_000415103.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GL188_RS10070 (GL188_10230) galU 1959118..1960017 (+) 900 WP_024477964.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GL188_RS10075 (GL188_10235) - 1960084..1960761 (-) 678 WP_000658498.1 rhomboid family intramembrane serine protease -
  GL188_RS10080 (GL188_10240) - 1960745..1961284 (-) 540 WP_024477965.1 5-formyltetrahydrofolate cyclo-ligase -
  GL188_RS10085 (GL188_10245) - 1961296..1962426 (-) 1131 WP_197120263.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19750.82 Da        Isoelectric Point: 4.8839

>NTDB_id=351287 GL188_RS10060 WP_224757748.1 1957428..1957922(-) (comR) [Streptococcus pneumoniae strain 573]
MIQYMLIIEVNNSGGSCRLREFGEKIKRLRLAKKISRSEFCGDESELSIRQLIRIENGESRPILTKLKYIAERLEVEDYK
LMPSYIELDKEYLELKYFLMRTPTYEDETIAQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALTNYTVQKLPEKLVEI
LSFW

Nucleotide


Download         Length: 495 bp        

>NTDB_id=351287 GL188_RS10060 WP_224757748.1 1957428..1957922(-) (comR) [Streptococcus pneumoniae strain 573]
TTGATTCAGTATATGCTTATAATAGAGGTAAACAACTCAGGAGGTTCTTGTAGGTTGCGAGAGTTTGGCGAAAAAATTAA
AAGATTACGTTTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTA
GAATTGAAAATGGAGAATCCAGACCAATACTAACAAAGTTAAAATATATTGCTGAACGTTTGGAGGTTGAAGATTACAAG
TTGATGCCAAGTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGA
TGAAACTATCGCCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAA
GATTTATCATCCCAAATTATTCATATCTGGCACTAACGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATA
CTGTCCTTCTGGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(90-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

55.833

73.171

0.409
  comR Streptococcus pyogenes MGAS315

54.167

73.171

0.396
  comR Streptococcus mutans UA159

52.5

73.171

0.384