Detailed information NTG0351273

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: E2C16_RS06630
• Genome accession: NZ_CP038012
• Coordinates: 1353229..1355643 (-)
• Length: 804 a.a.
• NCBI ID: WP_115360850.1
• Uniprot ID: A0A380BP49
• Organism: Sporosarcina pasteurii strain BNCC 337394
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1348229..1360643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E2C16_RS06610 (E2C16_06610)	-	1349193..1349486 (-)	294	WP_115360858.1	DUF1292 domain-containing protein	-
E2C16_RS06615 (E2C16_06615)	ruvX	1349499..1349918 (-)	420	WP_115360856.1	Holliday junction resolvase RuvX	-
E2C16_RS06620 (E2C16_06620)	-	1349915..1350187 (-)	273	WP_115360854.1	IreB family regulatory phosphoprotein	-
E2C16_RS06625 (E2C16_06625)	alaS	1350251..1352884 (-)	2634	WP_115360852.1	alanine--tRNA ligase	-
E2C16_RS06630 (E2C16_06630)	recD2	1353229..1355643 (-)	2415	WP_115360850.1	ATP-dependent RecD-like DNA helicase	Machinery gene
E2C16_RS06635 (E2C16_06635)	-	1355657..1356316 (-)	660	WP_115360848.1	tetratricopeptide repeat protein	-
E2C16_RS06640 (E2C16_06640)	mnmA	1356329..1357444 (-)	1116	WP_134268521.1	tRNA 2-thiouridine(34) synthase MnmA	-
E2C16_RS06645 (E2C16_06645)	-	1357473..1358615 (-)	1143	WP_115360844.1	cysteine desulfurase family protein	-
E2C16_RS06650 (E2C16_06650)	-	1358629..1359048 (-)	420	WP_115360842.1	Rrf2 family transcriptional regulator	-
E2C16_RS06655 (E2C16_06655)	-	1359177..1360466 (+)	1290	WP_115360840.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 804 a.a.
• Molecular weight: 89578.29 Da
• Isoelectric Point: 4.6642

>NTDB_id=351273 E2C16_RS06630 WP_115360850.1 1353229..1355643(-) (recD2) [Sporosarcina pasteurii strain BNCC 337394]
MESQTEELYIIGRPFVTIFHNADNLFTICKCSITKTNCDYDEKEIVVKGNFPQLAPEEDYKFIGRLVNHPTYGAQFDVHT
FTKEMPGTETGLVQYLSGDLFPGIGAKTASTIVETLGTDAINKILNDATVLDKVPRLTEERKATLVSVLQQNMGLERTII
QLNEWGFGPKVAMRIYQAYREETIELLTENPYRLTEEIEGVGFQRADELGRHLGITGNHPSRIKAAILYTINEVVQSEGH
VYVEGEVALPEVKRMLEMSQSMEIPYSSISQAIIELVEEGKLSAEKQRLYTPSLYFSEIGFASKIQEIMSNGSEDQFPVS
EIRSAIGEVEERLGVNYAETQVAAIEKALHSPAMILTGGPGTGKTTVIRGFVEVFAELHGLSLDPAEYAKKKEAFPIILA
APTGRAAKRMSESTELPAMTIHRLLGFTGQQKEEETDREIEGKLVIIDEMSMVDTWLGHQLLKALPKDVQILFVGDQDQL
PSVGPGQVLKDMLESNVIPVVELTEIYRQSAGSTIIEMAHMIKRSEWSTNIVGKTSDRSFIAASADRILDAVHQIIDNAI
SKGHSIKDIQVLAPMYKGPAGIDGLNKMIQKMVNPPSSKRKEVTFGDVVYRIGDKVLQLVNQPESNVFNGDMGEVISIIK
ANETVDKKELLVVSYDGIEVTYERKDLNQITLSYCCSIHKSQGSEFPIVIMPIVRAHRKMLKRNLLYTGITRAQKFLILC
GEPEEFKAGILRADELARQTTLQERLNAYGEPHTATDEDSEETLEVEQEEVEKNYELTTDNILAIDPMIGMAGITPYAYV
QDVD

Nucleotide

• Length: 2415 bp

>NTDB_id=351273 E2C16_RS06630 WP_115360850.1 1353229..1355643(-) (recD2) [Sporosarcina pasteurii strain BNCC 337394]
GTGGAAAGTCAAACCGAAGAACTGTATATAATTGGGAGACCGTTCGTTACAATATTTCATAATGCTGATAATCTCTTTAC
GATTTGTAAATGTAGTATTACAAAAACGAACTGTGATTATGATGAAAAAGAAATTGTTGTAAAAGGAAACTTTCCGCAAC
TAGCTCCTGAAGAAGATTATAAATTTATTGGTAGACTTGTGAATCATCCAACGTACGGTGCCCAGTTTGATGTCCATACT
TTTACGAAAGAAATGCCTGGAACAGAAACGGGACTTGTTCAGTATTTATCGGGTGACTTGTTTCCAGGAATTGGGGCGAA
AACTGCTTCCACCATCGTTGAAACACTTGGGACAGATGCCATTAATAAAATATTAAATGATGCAACTGTTTTGGATAAAG
TTCCCCGTTTAACAGAAGAACGGAAGGCTACCCTTGTCTCTGTTTTGCAACAAAACATGGGATTAGAACGAACGATTATT
CAGTTGAATGAATGGGGCTTCGGACCGAAAGTAGCCATGCGAATCTATCAAGCGTACCGTGAAGAAACAATTGAACTATT
AACTGAAAATCCATACCGGTTGACAGAGGAAATTGAGGGCGTCGGTTTTCAACGGGCCGATGAACTCGGTCGACACTTAG
GGATAACAGGCAATCACCCTTCTAGAATTAAAGCTGCCATTTTATATACGATTAATGAAGTTGTGCAATCGGAAGGACAT
GTGTATGTAGAAGGGGAAGTCGCTTTACCTGAAGTAAAGCGCATGCTTGAAATGAGTCAATCTATGGAAATTCCCTATAG
TAGTATTTCACAAGCGATCATTGAACTCGTAGAAGAGGGAAAGTTATCTGCCGAAAAACAAAGGCTATACACCCCGTCAT
TATATTTTTCGGAAATAGGCTTTGCGTCAAAAATACAAGAAATTATGAGTAATGGGTCTGAAGATCAATTTCCAGTTTCA
GAAATCCGTTCAGCAATCGGTGAAGTGGAAGAGCGTCTTGGCGTCAATTATGCGGAAACACAAGTAGCTGCTATTGAAAA
AGCGCTCCATTCACCCGCGATGATTTTAACAGGTGGTCCAGGTACAGGGAAGACAACGGTAATTCGAGGGTTTGTGGAAG
TTTTTGCGGAACTTCATGGTTTGTCTTTAGATCCAGCAGAATATGCAAAAAAGAAAGAAGCCTTCCCGATTATTTTAGCC
GCTCCGACTGGAAGAGCAGCGAAACGGATGTCCGAATCGACGGAACTACCTGCGATGACAATCCATCGTCTACTCGGTTT
CACAGGCCAGCAAAAAGAAGAAGAAACCGACCGAGAAATCGAAGGGAAACTCGTCATTATCGATGAAATGTCTATGGTCG
ATACATGGCTAGGCCACCAGCTTTTAAAAGCACTCCCAAAAGACGTACAAATTTTATTTGTCGGTGACCAAGATCAATTG
CCTTCCGTCGGACCAGGTCAAGTGCTAAAGGATATGTTGGAATCTAACGTGATTCCAGTAGTCGAACTAACAGAAATTTA
TCGTCAAAGTGCAGGCTCCACAATTATTGAAATGGCCCATATGATAAAACGTTCAGAGTGGTCTACTAACATCGTTGGTA
AAACATCTGACCGTTCTTTTATAGCAGCAAGTGCGGACCGGATTTTGGATGCCGTACATCAAATTATCGATAATGCAATT
TCGAAAGGGCATAGCATAAAAGATATCCAAGTGTTGGCGCCGATGTATAAAGGTCCTGCAGGCATTGACGGCTTAAATAA
AATGATTCAAAAAATGGTGAATCCCCCGAGCTCTAAACGAAAGGAAGTAACATTTGGAGACGTTGTTTACCGGATAGGCG
ACAAAGTGCTTCAACTTGTCAATCAACCGGAAAGCAACGTGTTTAACGGCGATATGGGGGAAGTTATTAGCATTATTAAA
GCAAATGAAACGGTCGATAAAAAAGAACTACTTGTCGTCTCTTATGATGGCATCGAAGTGACCTATGAAAGAAAAGACTT
AAATCAAATTACACTTTCTTATTGTTGCTCCATTCATAAGTCACAAGGAAGCGAATTTCCGATTGTCATTATGCCAATCG
TGCGTGCTCACCGGAAAATGTTAAAACGTAATCTTCTTTATACAGGAATTACACGTGCTCAAAAGTTTTTAATTCTTTGC
GGTGAACCAGAAGAGTTTAAAGCAGGTATTTTAAGGGCAGATGAACTCGCCCGCCAAACGACCTTACAAGAGCGTTTAAA
CGCATATGGTGAACCTCATACTGCTACAGATGAAGATAGTGAAGAAACGCTTGAAGTTGAGCAGGAAGAAGTAGAAAAAA
ATTATGAACTAACGACCGACAATATCCTTGCGATTGACCCGATGATCGGAATGGCTGGTATTACGCCATATGCATACGTA
CAGGATGTCGATTGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-644)

• Helix-hairpin-helix containing domain (HHH_RecD2) (152-242)

• AAA domain (AAA_30) (337-543)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

3D structure

• AlphaFold DB: A0A380BP49

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.559	99.627	0.524