Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AHTJR_RS14480 Genome accession   NZ_CP038009
Coordinates   3083342..3084772 (+) Length   476 a.a.
NCBI ID   WP_005083966.1    Uniprot ID   N9F1D8
Organism   Acinetobacter haemolyticus strain TJR01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3078342..3089772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS14460 (AHTJR_14460) thrC 3078626..3079765 (+) 1140 WP_004637599.1 threonine synthase -
  AHTJR_RS14465 (AHTJR_14465) pbpG 3079825..3080889 (-) 1065 WP_004637598.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AHTJR_RS14470 (AHTJR_14470) - 3081100..3081735 (+) 636 WP_005083960.1 response regulator -
  AHTJR_RS14475 (AHTJR_14475) pilS 3081754..3083319 (+) 1566 WP_134252976.1 sensor histidine kinase Regulator
  AHTJR_RS14480 (AHTJR_14480) pilR 3083342..3084772 (+) 1431 WP_005083966.1 sigma-54-dependent transcriptional regulator Regulator
  AHTJR_RS14485 (AHTJR_14485) - 3084811..3085977 (-) 1167 WP_008942249.1 S41 family peptidase -
  AHTJR_RS14490 (AHTJR_14490) gpmI 3085987..3087531 (-) 1545 WP_100834131.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AHTJR_RS14495 (AHTJR_14495) lptG 3087656..3088726 (-) 1071 WP_004637591.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53565.53 Da        Isoelectric Point: 6.1502

>NTDB_id=351256 AHTJR_RS14480 WP_005083966.1 3083342..3084772(+) (pilR) [Acinetobacter haemolyticus strain TJR01]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRICQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPISMPSAPSYSQ
EEVEQPQYTSPSTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDDT

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=351256 AHTJR_RS14480 WP_005083966.1 3083342..3084772(+) (pilR) [Acinetobacter haemolyticus strain TJR01]
ATGGCAACTAAACAACCACTCGTCTTGCTCGTAGACGACGAAGAGGACTTGTGTCTTCTCATGCAAATGACACTTGCACG
TATGGGAATTAAGACACATTTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACTGAATTTCAATATGATGCATGTT
TAACTGATTTAAATCTTCCAGACGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAATTATCCAAATACTCCGATC
GCTGTGCTGACGGCCTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCTGGGGCATTTGACTTCGTTAGCAAACC
AGTCAACCAAGTGCATTTGGATCAATTGATTCAAAAAGCATTGAATCGACCACGACCTGAGCAAGAAGCGGCTGAAACAG
CCTTAGAAAATAAACTCCTGATTGGACGTTCTGCGCCAATTCAACAACTGCGCATTGCATTAAAGAAAATCGCGCGATCA
CAAGCGCCTGTCTTTATCACTGGGGAGTCGGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTTCACCGCTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCCATAAACTGCGGTGCAATTCCAACAGAACTGATGGAAAGCGAGCTTTTCGGGCACAAAA
AAGGCAGTTTCACTGGGGCGACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTCGATGAA
ATCGCTGAACTGCCACTCAACATGCAAGTAAAATTATTGCGTGCAGTGCAAGAAAAGAAAATCCGCCCTGTAGGCTCAGA
CCAAGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGTCACCAAGATCTTGAGTTACTGGTTCAGCAAGGACGATTCC
GACAGGATTTATTTTTCCGTATCCACGTTATGGATATTGTACTCCCACCATTACGTGAACGTGGACAGGACATCCTGTTA
TTAGCGAATCATTTTATCCAAAGAATTTGCCAAGAATGGGAACTGCCTGCCAAGACGTTATCGTCTCGCGCAGAGCAATT
TTTATTACAACAATATTTTCCTGGTAATGTGCGCGAACTACGCAATATTATTGAACGTGCAATCACGCTCAGCGATGATG
AAACGATTGATTTAGCGCACTTACAAACAGCGCCATTACGCAGTCCAATTTCAATGCCATCAGCGCCATCTTATAGCCAA
GAAGAAGTTGAGCAGCCACAATACACCAGCCCAAGCACAAGTTCGAAAAAACTTCCACCTGAAGGTTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTGCTACTTAATGCATTAAATCTAACTCATTGGAATCGAACGCTCGCCGCGAAGAAACTCG
GGATGACCTTCCGCTCTTTGCGTTATCGTTTGAAAAAATTCGGATTAGATACTGAAGAAGATGACACCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9F1D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.454

100

0.845
  pilR Pseudomonas aeruginosa PAK

51.62

97.269

0.502

Multiple sequence alignment