Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AHTJR_RS14340 Genome accession   NZ_CP038009
Coordinates   3054407..3054733 (-) Length   108 a.a.
NCBI ID   WP_004637627.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJR01     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3049407..3059733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS14320 (AHTJR_14320) - 3049714..3050322 (-) 609 WP_134252965.1 FHA domain-containing protein -
  AHTJR_RS14325 (AHTJR_14325) gspD 3050401..3052611 (-) 2211 WP_113997834.1 type II secretion system secretin GspD -
  AHTJR_RS14330 (AHTJR_14330) - 3052653..3053489 (-) 837 WP_134252966.1 type II secretion system protein N -
  AHTJR_RS14335 (AHTJR_14335) gspN 3053489..3054232 (-) 744 WP_026056326.1 type II secretion system protein N -
  AHTJR_RS14340 (AHTJR_14340) hns 3054407..3054733 (-) 327 WP_004637627.1 H-NS family nucleoid-associated regulatory protein Regulator
  AHTJR_RS14345 (AHTJR_14345) - 3055164..3055595 (-) 432 WP_005083921.1 acyl-CoA thioesterase -
  AHTJR_RS14350 (AHTJR_14350) - 3055604..3056797 (-) 1194 WP_134252967.1 heme biosynthesis protein HemY -
  AHTJR_RS14355 (AHTJR_14355) - 3056803..3057630 (-) 828 WP_005087940.1 hypothetical protein -
  AHTJR_RS14360 (AHTJR_14360) - 3057627..3058403 (-) 777 WP_134252968.1 uroporphyrinogen-III synthase -
  AHTJR_RS14365 (AHTJR_14365) hemC 3058403..3059320 (-) 918 WP_134252969.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12251.93 Da        Isoelectric Point: 5.0269

>NTDB_id=351253 AHTJR_RS14340 WP_004637627.1 3054407..3054733(-) (hns) [Acinetobacter haemolyticus strain TJR01]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=351253 AHTJR_RS14340 WP_004637627.1 3054407..3054733(-) (hns) [Acinetobacter haemolyticus strain TJR01]
ATGAAACCAGATATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCTGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATAGCAATTGCTGATGGTATTGGTTTAAGCGTTGAAGAGTTAT
TGGCTGTAGGTGAGCAAAAGCGTAAAAAGACTACGCGTAAAGCTGTAGAACCACGCTACCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTGGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment