Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AHTJR_RS06580 Genome accession   NZ_CP038009
Coordinates   1393906..1394613 (-) Length   235 a.a.
NCBI ID   WP_005082645.1    Uniprot ID   A0A5P1UT60
Organism   Acinetobacter haemolyticus strain TJR01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388906..1399613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS06565 (AHTJR_06565) - 1389564..1391155 (+) 1592 Protein_1270 5-oxoprolinase/urea amidolyase family protein -
  AHTJR_RS06570 (AHTJR_06570) - 1391139..1392869 (+) 1731 WP_134252055.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  AHTJR_RS06575 (AHTJR_06575) - 1392925..1393704 (-) 780 WP_004639486.1 M48 family metallopeptidase -
  AHTJR_RS06580 (AHTJR_06580) crp 1393906..1394613 (-) 708 WP_005082645.1 cAMP-activated global transcriptional regulator CRP Regulator
  AHTJR_RS06585 (AHTJR_06585) - 1394760..1395182 (+) 423 WP_004639481.1 OsmC family protein -
  AHTJR_RS06590 (AHTJR_06590) - 1395247..1396047 (-) 801 WP_166739953.1 peptidoglycan DD-metalloendopeptidase family protein -
  AHTJR_RS06595 (AHTJR_06595) clpB 1396311..1398890 (+) 2580 WP_134252059.1 ATP-dependent chaperone ClpB -
  AHTJR_RS06600 (AHTJR_06600) - 1399060..1399485 (+) 426 WP_004639475.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26618.22 Da        Isoelectric Point: 4.8321

>NTDB_id=351241 AHTJR_RS06580 WP_005082645.1 1393906..1394613(-) (crp) [Acinetobacter haemolyticus strain TJR01]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESRSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEENTFPEDEYDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=351241 AHTJR_RS06580 WP_005082645.1 1393906..1394613(-) (crp) [Acinetobacter haemolyticus strain TJR01]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGCCAACTACCTGAATCAGTAAAAGCTTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAGATCACTGTATTTAATTT
TAAAAGGTTCAGTATCAATTATTTTACGTGAAGATGATGAACGTGAAATCGTTGTTGCTTATTTGAACCCTGGGGACTTC
TTTGGTGAGATGGGTCTTTTTGAAAAGAACCCTCAACGTACTGCTGAAGTACGCACTCGAGATGTATGCGAAATTGCAGA
GATTTCTTATGACAATTTCCATGAATTAAGTAAACAGTATCCTGATTTAAGTTACGCAGTATTTGCTCAACTGGTGCGTC
GTCTTAAAAACACAACTCGTAAAGTAACTGACCTTGCCTTTATCGACGTTTCAGGTCGTATTGCACGTTGCTTAATCGAC
TTATCTGCTCAACCAGAGGCAATGATTTTACCGAATGGTCGTCAGATTCGTATCACTCGTCAAGAGATTGGTCGTATTGT
CGGTTGCTCTCGTGAAATGGTTGGCCGTGTCCTCAAAACACTTGAAGATCAAGGCATGATCCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATGCATCTTTAGAGGAAAATACCTTTCCTGAAGATGAATATGATGATGAAGATTGA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UT60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.617

100

0.936
  crp Vibrio cholerae strain A1552

47.573

87.66

0.417
  crp Haemophilus influenzae Rd KW20

49.231

82.979

0.409

Multiple sequence alignment