Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DCC84_RS25685 Genome accession   NZ_CP038001
Coordinates   5460871..5463162 (-) Length   763 a.a.
NCBI ID   WP_134327692.1    Uniprot ID   -
Organism   Pseudomonas sp. SXM-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5455871..5468162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC84_RS25650 (DCC84_25650) murB 5456318..5457337 (-) 1020 WP_134327165.1 UDP-N-acetylmuramate dehydrogenase -
  DCC84_RS25655 (DCC84_25655) - 5457334..5457798 (-) 465 WP_004371338.1 low molecular weight protein-tyrosine-phosphatase -
  DCC84_RS25660 (DCC84_25660) kdsB 5457798..5458562 (-) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DCC84_RS25665 (DCC84_25665) - 5458559..5458744 (-) 186 WP_003174668.1 Trm112 family protein -
  DCC84_RS25670 (DCC84_25670) lpxK 5458769..5459779 (-) 1011 WP_004371358.1 tetraacyldisaccharide 4'-kinase -
  DCC84_RS25675 (DCC84_25675) - 5459779..5460207 (-) 429 WP_004371361.1 biopolymer transporter ExbD -
  DCC84_RS25680 (DCC84_25680) exbB 5460204..5460839 (-) 636 WP_004371363.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DCC84_RS25685 (DCC84_25685) comA 5460871..5463162 (-) 2292 WP_134327692.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DCC84_RS25690 (DCC84_25690) - 5463310..5463825 (+) 516 WP_004371367.1 DUF2062 domain-containing protein -
  DCC84_RS25695 (DCC84_25695) - 5463829..5465199 (-) 1371 WP_008434990.1 sensor histidine kinase -
  DCC84_RS25700 (DCC84_25700) - 5465186..5465914 (-) 729 WP_004371371.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 82830.29 Da        Isoelectric Point: 10.2248

>NTDB_id=351184 DCC84_RS25685 WP_134327692.1 5460871..5463162(-) (comA) [Pseudomonas sp. SXM-1]
MFALALGLLALRFLPALPSGGWLLLMPVLALMLLPFRTYPLGFFLLGLGWACLSAQWALDDRLAPHLDGQTRWVEGRVSG
LPQQMGDGVRFQLTDSRSRKDLLPKRIRVSWRGGPPVKSGERWRLAVTLKRPSGLLNADGFDYEAWLLAQRIGATGSVKD
GQLLAPARHAWRDGIRQRLLAVDAQGREAGLAALVLGDGSGLAAEDWRVLQATGTVHLLVISGQHIGLLAGLIYGLVAGL
ARYGGWPKPLPWLPWACGLAFAAALGYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALDAVLILEPLASLQ
PGFWLSFAAVAVLILAFSGRLGPWPLWQAWTRAQWMIAIGLFPLLLVLGLPISLSGPLANLVAVPWISLVVLPLALLGTV
LLPLPYIGEGLLWLAGGTLDGLFKALALLAQYLPAWIPAQVPIGYWLVSLLGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
ESIPHGLVEVVQLDVGQGLAIILRTRNHALLYDAGPRSGEFDLGARVVLPALRKLGVAELDVMLLSHADADHAGGALAVA
QGLPVKRVVGGETARLPASLGTQACVSGEQWEWDGVRFELWQWPDATDGNQMSCVLRLQANGERLLLTGDIDHDAERALL
ATPMGAPVDWLQAPHHGSRSSSSWAFLQRLAPKAVLISRGRSNGFGHPHPQVLERYQAVGSVIYDSAEQGALRLRVGTFQ
PPLAARSQRRFWRERPPQNSVTKERPLRQDALGQASPSTGPLW

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=351184 DCC84_RS25685 WP_134327692.1 5460871..5463162(-) (comA) [Pseudomonas sp. SXM-1]
ATGTTCGCACTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGTCCGGCGGCTGGCTGTTGCTGATGCC
GGTGCTGGCCCTGATGCTGTTGCCTTTTCGTACCTATCCGCTGGGGTTTTTCCTGCTTGGCCTGGGCTGGGCATGCCTCA
GCGCGCAGTGGGCGCTGGATGACCGGTTGGCCCCGCATCTGGATGGCCAGACCCGCTGGGTGGAAGGGCGTGTCAGCGGG
TTACCGCAGCAGATGGGCGACGGTGTGCGCTTCCAACTGACCGACAGCCGGTCACGCAAGGACCTGCTTCCCAAGCGCAT
TCGCGTGTCCTGGCGCGGCGGCCCACCGGTTAAGAGCGGTGAGCGCTGGCGACTGGCGGTGACTCTCAAGCGTCCTTCCG
GATTGCTCAATGCCGATGGCTTTGACTATGAAGCCTGGCTGCTGGCCCAGCGGATTGGCGCCACCGGCTCGGTCAAGGAC
GGCCAACTGCTGGCACCGGCACGACATGCCTGGCGCGACGGGATTCGCCAGCGGCTGCTGGCAGTGGATGCCCAGGGGCG
AGAGGCGGGCCTGGCGGCGCTGGTGCTCGGCGATGGTTCCGGGTTGGCCGCCGAGGATTGGCGGGTCCTGCAAGCCACTG
GCACCGTGCATTTACTGGTGATATCCGGGCAGCACATCGGCCTGCTGGCGGGGTTGATCTATGGCCTGGTCGCCGGTCTT
GCGCGCTACGGGGGTTGGCCGAAACCTTTGCCGTGGCTGCCCTGGGCCTGCGGCCTGGCGTTTGCTGCAGCGCTGGGCTA
CGGCCTGCTGGCAGGTTTCGAGGTGCCGGTGCAACGGGCCTGTGTGATGGTGGGCCTGGTATTGCTGTGGCGTCTGCGGT
TTCGTCACCTGGGAATCTGGTGGCCGCTGTTGCTGGCGCTGGACGCGGTGCTGATCCTCGAACCGCTGGCCAGCCTGCAG
CCGGGGTTCTGGTTGTCTTTTGCGGCTGTTGCGGTGCTGATTTTGGCGTTCAGTGGCCGATTGGGCCCCTGGCCCTTGTG
GCAAGCCTGGACCCGCGCCCAATGGATGATTGCCATCGGCCTGTTTCCGCTGCTGCTGGTGCTCGGCCTGCCCATCAGCC
TGAGCGGGCCGCTGGCCAACCTGGTTGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCCCTGGCCTTACTGGGTACGGTG
TTATTGCCGCTGCCTTATATAGGAGAGGGGTTGTTATGGCTGGCGGGCGGCACGCTGGACGGGCTGTTCAAGGCACTGGC
GCTGCTGGCGCAGTACTTGCCGGCCTGGATACCGGCGCAAGTGCCCATTGGCTATTGGCTGGTGAGCCTGCTGGGGGCGG
TGCTGTTATTGCTGCCCAAGGGCGTCCCGTTTCGGCTGCTGGGTTGGCCGATGTTGCTGCTGGCGGTGTTTCCGCCGCGG
GAGTCGATACCTCATGGGCTGGTCGAGGTGGTGCAGCTGGATGTCGGCCAAGGGTTGGCGATCATCCTGCGTACCCGCAA
CCACGCGTTGCTGTATGACGCCGGGCCGCGCTCCGGTGAGTTCGATCTTGGCGCGCGTGTCGTATTGCCTGCGTTGCGCA
AGCTGGGTGTCGCAGAGCTGGACGTGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGCGGCGCGTTGGCCGTCGCC
CAAGGGTTGCCGGTCAAGCGTGTGGTGGGCGGTGAGACGGCACGGCTGCCGGCCTCGCTCGGTACCCAAGCGTGTGTCAG
CGGCGAGCAGTGGGAGTGGGATGGCGTGAGGTTCGAGCTATGGCAATGGCCTGATGCGACGGACGGTAACCAGATGTCCT
GCGTGTTGCGGCTGCAGGCCAATGGCGAGCGCTTGTTGCTGACCGGGGATATTGACCATGACGCCGAGCGGGCATTGCTG
GCCACTCCCATGGGCGCTCCTGTCGATTGGCTGCAAGCGCCGCACCACGGCAGCCGCAGCTCGTCGTCATGGGCCTTTCT
ACAGCGCCTGGCACCCAAGGCCGTGTTAATTTCCCGGGGGCGCAGCAATGGGTTTGGCCACCCGCATCCACAGGTGCTGG
AGCGTTACCAGGCCGTTGGCAGCGTGATTTATGACAGTGCCGAGCAAGGCGCACTCCGCCTGCGAGTGGGCACCTTCCAG
CCGCCGCTGGCCGCGCGCAGCCAGCGGCGTTTCTGGCGCGAGCGCCCGCCGCAAAACAGCGTTACCAAAGAGCGGCCCCT
GCGACAGGATGCTCTGGGGCAGGCCAGCCCTTCCACCGGACCCTTATGGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(194-459)

Domain of unknown function (DUF4131) (DUF4131)

(16-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.25

94.364

0.578
  comA Ralstonia pseudosolanacearum GMI1000

35.185

100

0.374

Multiple sequence alignment