Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DCC84_RS25680 Genome accession   NZ_CP038001
Coordinates   5460204..5460839 (-) Length   211 a.a.
NCBI ID   WP_004371363.1    Uniprot ID   A0A2N7YCH4
Organism   Pseudomonas sp. SXM-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5455204..5465839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC84_RS25650 (DCC84_25650) murB 5456318..5457337 (-) 1020 WP_134327165.1 UDP-N-acetylmuramate dehydrogenase -
  DCC84_RS25655 (DCC84_25655) - 5457334..5457798 (-) 465 WP_004371338.1 low molecular weight protein-tyrosine-phosphatase -
  DCC84_RS25660 (DCC84_25660) kdsB 5457798..5458562 (-) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DCC84_RS25665 (DCC84_25665) - 5458559..5458744 (-) 186 WP_003174668.1 Trm112 family protein -
  DCC84_RS25670 (DCC84_25670) lpxK 5458769..5459779 (-) 1011 WP_004371358.1 tetraacyldisaccharide 4'-kinase -
  DCC84_RS25675 (DCC84_25675) - 5459779..5460207 (-) 429 WP_004371361.1 biopolymer transporter ExbD -
  DCC84_RS25680 (DCC84_25680) exbB 5460204..5460839 (-) 636 WP_004371363.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DCC84_RS25685 (DCC84_25685) comA 5460871..5463162 (-) 2292 WP_134327692.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DCC84_RS25690 (DCC84_25690) - 5463310..5463825 (+) 516 WP_004371367.1 DUF2062 domain-containing protein -
  DCC84_RS25695 (DCC84_25695) - 5463829..5465199 (-) 1371 WP_008434990.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22870.97 Da        Isoelectric Point: 6.8761

>NTDB_id=351183 DCC84_RS25680 WP_004371363.1 5460204..5460839(-) (exbB) [Pseudomonas sp. SXM-1]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPDHLLGQVWGWIKNKQLDKTKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGNA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=351183 DCC84_RS25680 WP_004371363.1 5460204..5460839(-) (exbB) [Pseudomonas sp. SXM-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGTGTAACGCCTGACCACCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGACAAAACTCAAGGAACTGCGCGCCAACTCGCCCCTGGGTGAAATCCTCGCCGCCGGCCTCGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAGTTGGAGCGCTACAT
CAATGCCCTGGGCACCATCGCCGCCATGGCACCGTTGCTCGGCCTGCTCGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCATTCATGGGGTCGGGCATGACCACCAACGCCGCAGTGCTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTACAGGGCGACCGTGACGTGGACCTGGTTGAGGGCAACGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7YCH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment