Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   GL185_RS05070 Genome accession   NZ_CP046357
Coordinates   1016349..1017398 (-) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 525     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1011349..1022398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL185_RS05040 (GL185_05095) blpI 1011477..1011674 (-) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  GL185_RS11595 comA/nlmT 1011956..1012543 (+) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  GL185_RS05050 (GL185_05100) comA/nlmT 1012470..1014113 (+) 1644 WP_078133412.1 peptide cleavage/export ABC transporter Regulator
  GL185_RS05055 (GL185_05105) - 1014124..1015485 (+) 1362 WP_001069060.1 bacteriocin secretion accessory protein -
  GL185_RS05060 (GL185_05110) blpC 1015542..1015670 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  GL185_RS05065 (GL185_05115) - 1015852..1016181 (+) 330 WP_000132572.1 hypothetical protein -
  GL185_RS05070 (GL185_05120) pptB 1016349..1017398 (-) 1050 WP_000653771.1 ABC transporter permease Regulator
  GL185_RS05075 (GL185_05125) pptA 1017395..1018126 (-) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  GL185_RS05080 (GL185_05130) - 1018194..1018604 (+) 411 WP_001278301.1 HIT family protein -
  GL185_RS05085 (GL185_05135) - 1018614..1018901 (+) 288 WP_000777753.1 hypothetical protein -
  GL185_RS05090 (GL185_05140) - 1019063..1019257 (+) 195 WP_001808905.1 hypothetical protein -
  GL185_RS05095 (GL185_05145) dnaJ 1019591..1020727 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -
  GL185_RS05100 (GL185_05150) - 1021129..1021485 (-) 357 WP_000114422.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=350984 GL185_RS05070 WP_000653771.1 1016349..1017398(-) (pptB) [Streptococcus pneumoniae strain 525]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=350984 GL185_RS05070 WP_000653771.1 1016349..1017398(-) (pptB) [Streptococcus pneumoniae strain 525]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTTAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47